PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g080370.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 278aa MW: 31522.5 Da PI: 6.5951 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.7 | 2e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed ll+++++ +G g+W++ +++ g+ R++k+c++rw +yl Pd.00g080370.m01 14 RGSWTAREDTLLIQYIQSHGEGHWSSLPKKAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 55.9 | 1e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eEd+l+v+++++lG++ W++Ia +++ gRt++++k++w+++ Pd.00g080370.m01 67 RGNITPEEDDLIVRLHALLGNR-WSLIAGRLP-GRTDNEIKNYWNTH 111 7999******************.*********.************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 278 aa Download sequence |
MGRAPCCSKV GLHRGSWTAR EDTLLIQYIQ SHGEGHWSSL PKKAGLLRCG KSCRLRWMNY 60 LRPDIKRGNI TPEEDDLIVR LHALLGNRWS LIAGRLPGRT DNEIKNYWNT HIAKRLRIQK 120 TSTQEVAPKP KSKCVQAEEA KKSDDDQENI GAITKRTKLH LPKPTRVSPV KTPVGSFCDG 180 EGDHDAEVPN YFHVSWSDDM KKKDDDCFGE GLVWGENVED CYDFVQVFDP ARSQNSEEAA 240 AAAERVAMTW KICEEYEQDI KADQDHGQLE SFVDSLLI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22640.1 | 5e-63 | MYB family protein |