PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g077990.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

RAV

Protein Properties

Length: 369aa MW: 42714.1 Da PI: 6.6012

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g077990.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	32.1	2.9e-10	61	108	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++kGV ++g W A+I+ + +r++lg+f +++eAa a++ a+ kl++ Pd.00g077990.m01 61 KFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEKEAAMAYDSAAIKLRN 108 789996.566899**999......44******99***********97 PP
2	B3	91.4	6.8e-29	186	280	1	87
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ltpsdv+k++rlv+pkk+a e+ +++ +++l+++d+ r+W+++++y+k+s+++v+t+GW++Fvk+n+Lk++D+++F+ Pd.00g077990.m01 186 FQKELTPSDVGKLNRLVIPKKYAVEYfpcicenvEENGVDDIELVFYDKLMRVWKFRYCYWKSSQSFVFTRGWNRFVKENNLKANDVITFYTC 278 99***************************87744444889**********************************************965 PP SS CS B3 86 gr 87 ++ Pd.00g077990.m01 279 EN 280 44 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MPILCLSLPL RFTMEEDAAP SMISSVQRNV APETSDSNDN DFGLLHPNKR ARLDNDVSFA 60 KFKGVVPQQN GHWGAQIYAN HQRIWLGTFK SEKEAAMAYD SAAIKLRNGK DLHRNFPWTN 120 FTIQEPDFQN HYTTDAIIKM IRDGSYPSKF DAFIRSQKQS QTKEMGKGNN SIRVHGDGKI 180 LSRQLFQKEL TPSDVGKLNR LVIPKKYAVE YFPCICENVE ENGVDDIELV FYDKLMRVWK 240 FRYCYWKSSQ SFVFTRGWNR FVKENNLKAN DVITFYTCEN DDQLREEDRE GATFWLIDVM 300 HSEGDSKRPC LLEEEINKHE CEDLQVKLEL NLGGSSSYKF QQGECKYSED HKASMADQKG 360 FRLFGVNIN

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MPILCLSLPL RFTMEEDAAP SMISSVQRNV APETSDSNDN DFGLLHPNKR ARLDNDVSFA  60
KFKGVVPQQN GHWGAQIYAN HQRIWLGTFK SEKEAAMAYD SAAIKLRNGK DLHRNFPWTN  120
FTIQEPDFQN HYTTDAIIKM IRDGSYPSKF DAFIRSQKQS QTKEMGKGNN SIRVHGDGKI  180
LSRQLFQKEL TPSDVGKLNR LVIPKKYAVE YFPCICENVE ENGVDDIELV FYDKLMRVWK  240
FRYCYWKSSQ SFVFTRGWNR FVKENNLKAN DVITFYTCEN DDQLREEDRE GATFWLIDVM  300
HSEGDSKRPC LLEEEINKHE CEDLQVKLEL NLGGSSSYKF QQGECKYSED HKASMADQKG  360
FRLFGVNIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	1e-108	RAV family protein