PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g072250.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 397aa MW: 43901.7 Da PI: 7.2642

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g072250.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.1	4e-10	147	171	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ Pd.00g072250.m01 147 FKTKLCCKFRA-GTCPYVTNCNFAHS 171 69*******.***********8 PP
2	zf-CCCH	18.4	3.9e-06	220	245	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ Pd.00g072250.m01 220 YKGRHCKKFYTEEGCPYGDNCTFLHD 245 77888********************7 PP
3	zf-CCCH	43.3	6.1e-14	277	302	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg Pd.00g072250.m01 277 WKTRICNKWELTGYCPFGSKCHFAHG 302 8************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MVSSLSFGHF EAVDPTAIPT RCFLEVPLSH VAKISQNFSN LYRISVNSAC GYFPLCYENL 60 ETNVVQVITG NSVGGDIWSA DQAVWATEDE YRVWNNGDAL ADTMSNSNYD QRQSQSRSGS 120 EPPNKKSRNS QDATSSNRSK AIGKMFFKTK LCCKFRAGTC PYVTNCNFAH SIEELRRPPP 180 NWQEIVAAHE EEKGVSSEPR EEYQIPIVST GYGVETQRSY KGRHCKKFYT EEGCPYGDNC 240 TFLHDEQSKN RESVAISLGP GGYGGAANGA NNKPSNWKTR ICNKWELTGY CPFGSKCHFA 300 HGVAELHRYG GGLVEGDARE SSSAPPDNKQ GGVPSKTPAD TVVVSVPLVP HSDVYHLGVP 360 SQRSSIVNQR PGQRAHQKWK GPDKISRIYG DWIDEIE

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MVSSLSFGHF EAVDPTAIPT RCFLEVPLSH VAKISQNFSN LYRISVNSAC GYFPLCYENL  60
ETNVVQVITG NSVGGDIWSA DQAVWATEDE YRVWNNGDAL ADTMSNSNYD QRQSQSRSGS  120
EPPNKKSRNS QDATSSNRSK AIGKMFFKTK LCCKFRAGTC PYVTNCNFAH SIEELRRPPP  180
NWQEIVAAHE EEKGVSSEPR EEYQIPIVST GYGVETQRSY KGRHCKKFYT EEGCPYGDNC  240
TFLHDEQSKN RESVAISLGP GGYGGAANGA NNKPSNWKTR ICNKWELTGY CPFGSKCHFA  300
HGVAELHRYG GGLVEGDARE SSSAPPDNKQ GGVPSKTPAD TVVVSVPLVP HSDVYHLGVP  360
SQRSSIVNQR PGQRAHQKWK GPDKISRIYG DWIDEIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-127	C3H family protein