PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g065360.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 1213aa MW: 136959 Da PI: 8.6072

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g065360.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	78.9	8.8e-25	1045	1119	27	101
DUF260 27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l ++k++l Pd.00g065360.m01 1045 PARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIRDPVYGCVAHIFSLQQQVACLQAQLMQVKAQL 1119 689*****************************************************************9999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1213 aa Download sequence
MGSLNEDGTT TSFESSPEMV KFLCDRLLDP TQPISERFRA LFSLRNLKGP GPRNALITAT 60 RDSSNLLAHE AAFALGQMQD ADAIPALVVV LNDLSLHPIV RHEPPKPWKV EYAKSSRSSC 120 KTCKSPIEKE KLRLGKMVTA TQFDGFMPMW NHADCIMKKA KQIKSSGIEV SPTSRATCKS 180 CSQKILKAEV RISTKPEGQG PRGLAWHHAN CFMELSPSTE VEKLSGWETL PVADQAAVRA 240 LVKKVPSNAR GKKTEEQEDK EFLQQSTPKT STKRRKDSGG DQQSKVARLE GDVSTSWDVS 300 ARDATDLESI LEAQTKELWA LKDDLKKHVT TAELREMLEA NVQDSTGSEL DLRERCADGM 360 MFGALSRCPI CSGFLRYSGG MYRCHGYISE WSKCSYSTEE PERLKWKWKI PEDTDNQYLN 420 KWFKSQKVEK PVRILPPSTP NKPSGSQAFN GQSQSSNSAN LADLKVAFRG LPQESMEEWS 480 RKIEGVAGLV HSKIKKDTNC LVVSGALDDK DAEMRKARRM KLPIVREDYL VDCFKKQKKL 540 PFDLYKVEVV GEASSMVTVK VKGRSAVHES SGLQDTCHIL EDGKSIYNTT LSMSDLSTGV 600 NSYYILQIIQ DDKSSDCYVF RKWGRVGNDK IGGNKLEEMS KSDAICEFKR LFLEKTGNSW 660 EAWEQKQHFQ KQPGRFFPLD IDYGVNKQVS KKNQNNAASK LAPPLAELMK MLFNVETYRA 720 AMMEFEINMS EMPLGKLSKS NIQKGFEALT EIQNLLNSNG HAPSMKESLI VDASNRFFTV 780 IPSIHPRVIR DEDDFKSKVK MLEALQDIEI ASRLVGFDAD TDDSLDEKYR KLRCDIDPIP 840 HDSEDFRLIK KYLLTTHAPT HTDWSLELEE VFALEREGEF DKFAPYRKKL NNRMLLWHGS 900 RFTNFFGKGI YFADLVSKSA QYCYTDKKNP VGLMLLSEVA LGEVHELKKA TYMDKPPKGK 960 HSTKGLGKKI PQESEYVKWK DDVIVPCGKP VPSNIKASEL MYNEYIVYDK AQVKMQFLLK 1020 VRFHHKRKIP AGMPQGDKLQ QFPGPARFAA IHKVFGASNV SKLLLHVPVH DRCEAVVTIA 1080 YEAQARIRDP VYGCVAHIFS LQQQVACLQA QLMQVKAQLA HQSLVDSRNI ESTQWPGNVN 1140 GVTNFPNYPS YMNPISPQSS LESIDHNCSD IAMNMQEIQS SRDDFSYQAC SKRRPYNGDL 1200 GELQALALRM MRN

Sequence ? help Back to Top

Protein Sequence Length: 1213 aa Download sequence

MGSLNEDGTT TSFESSPEMV KFLCDRLLDP TQPISERFRA LFSLRNLKGP GPRNALITAT  60
RDSSNLLAHE AAFALGQMQD ADAIPALVVV LNDLSLHPIV RHEPPKPWKV EYAKSSRSSC  120
KTCKSPIEKE KLRLGKMVTA TQFDGFMPMW NHADCIMKKA KQIKSSGIEV SPTSRATCKS  180
CSQKILKAEV RISTKPEGQG PRGLAWHHAN CFMELSPSTE VEKLSGWETL PVADQAAVRA  240
LVKKVPSNAR GKKTEEQEDK EFLQQSTPKT STKRRKDSGG DQQSKVARLE GDVSTSWDVS  300
ARDATDLESI LEAQTKELWA LKDDLKKHVT TAELREMLEA NVQDSTGSEL DLRERCADGM  360
MFGALSRCPI CSGFLRYSGG MYRCHGYISE WSKCSYSTEE PERLKWKWKI PEDTDNQYLN  420
KWFKSQKVEK PVRILPPSTP NKPSGSQAFN GQSQSSNSAN LADLKVAFRG LPQESMEEWS  480
RKIEGVAGLV HSKIKKDTNC LVVSGALDDK DAEMRKARRM KLPIVREDYL VDCFKKQKKL  540
PFDLYKVEVV GEASSMVTVK VKGRSAVHES SGLQDTCHIL EDGKSIYNTT LSMSDLSTGV  600
NSYYILQIIQ DDKSSDCYVF RKWGRVGNDK IGGNKLEEMS KSDAICEFKR LFLEKTGNSW  660
EAWEQKQHFQ KQPGRFFPLD IDYGVNKQVS KKNQNNAASK LAPPLAELMK MLFNVETYRA  720
AMMEFEINMS EMPLGKLSKS NIQKGFEALT EIQNLLNSNG HAPSMKESLI VDASNRFFTV  780
IPSIHPRVIR DEDDFKSKVK MLEALQDIEI ASRLVGFDAD TDDSLDEKYR KLRCDIDPIP  840
HDSEDFRLIK KYLLTTHAPT HTDWSLELEE VFALEREGEF DKFAPYRKKL NNRMLLWHGS  900
RFTNFFGKGI YFADLVSKSA QYCYTDKKNP VGLMLLSEVA LGEVHELKKA TYMDKPPKGK  960
HSTKGLGKKI PQESEYVKWK DDVIVPCGKP VPSNIKASEL MYNEYIVYDK AQVKMQFLLK  1020
VRFHHKRKIP AGMPQGDKLQ QFPGPARFAA IHKVFGASNV SKLLLHVPVH DRCEAVVTIA  1080
YEAQARIRDP VYGCVAHIFS LQQQVACLQA QLMQVKAQLA HQSLVDSRNI ESTQWPGNVN  1140
GVTNFPNYPS YMNPISPQSS LESIDHNCSD IAMNMQEIQS SRDDFSYQAC SKRRPYNGDL  1200
GELQALALRM MRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42430.1	5e-38	LBD family protein