PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g037970.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

SBP

Protein Properties

Length: 490aa MW: 53452.9 Da PI: 9.3558

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g037970.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.8	9.9e-41	179	255	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dls+ak+yhr+h++C hsk+p+v+v+g+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+ Pd.00g037970.m01 179 CQVEGCNIDLSSAKDYHRKHRICANHSKSPKVVVEGVERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKPQT 255 **************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MEWNEKPPSL WDLENLFMFG AKVTDNSKKL QPADWGIEGE RGMNSESFYS TGVDGGSGVS 60 GSDLGDGSSK SSKSASISSS VGESKKPNFN LDAFEGFPND FIHKNESAKA EALGSSPTHE 120 VSAGSGEPLL SLKLGKRMYF EDVCAGNNPK SSSLSVISSS MPKTKRSKST GQSAFAPHCQ 180 VEGCNIDLSS AKDYHRKHRI CANHSKSPKV VVEGVERRFC QQCSRFHGLS EFDEKKRSCR 240 RRLSDHNARR RKPQTEALRN PTRLSSSLFS TDERQQMGLV LDQAPSVYTR HPSNLTWDGA 300 CSFKFGQTKE YFPKPAKGGG TGGQLNLANN GIPSSITMLY HDSSRQSPSK GTAAEVLNRG 360 AEESMISFNL GATQDFHRAL SLLSTSSWVS GEAKPVALDN NTNQNYQNNI PQPGMQAMTQ 420 GLPVSSEIFI SSKGLMSLVI KPTNSIKFDP KDSSFFHINV TLIKELSTAL VLQPTRFQIL 480 RCVVANSRAV

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MEWNEKPPSL WDLENLFMFG AKVTDNSKKL QPADWGIEGE RGMNSESFYS TGVDGGSGVS  60
GSDLGDGSSK SSKSASISSS VGESKKPNFN LDAFEGFPND FIHKNESAKA EALGSSPTHE  120
VSAGSGEPLL SLKLGKRMYF EDVCAGNNPK SSSLSVISSS MPKTKRSKST GQSAFAPHCQ  180
VEGCNIDLSS AKDYHRKHRI CANHSKSPKV VVEGVERRFC QQCSRFHGLS EFDEKKRSCR  240
RRLSDHNARR RKPQTEALRN PTRLSSSLFS TDERQQMGLV LDQAPSVYTR HPSNLTWDGA  300
CSFKFGQTKE YFPKPAKGGG TGGQLNLANN GIPSSITMLY HDSSRQSPSK GTAAEVLNRG  360
AEESMISFNL GATQDFHRAL SLLSTSSWVS GEAKPVALDN NTNQNYQNNI PQPGMQAMTQ  420
GLPVSSEIFI SSKGLMSLVI KPTNSIKFDP KDSSFFHINV TLIKELSTAL VLQPTRFQIL  480
RCVVANSRAV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	235	252	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	6e-75	SBP family protein