PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g026080.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 674aa MW: 73145.9 Da PI: 6.7157

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g026080.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.3	1.3e-16	66	110	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W++I +++g ++t+ q++s+ qk+ Pd.00g026080.m01 66 RERWTEEEHKKFLEALKLYGRA-WRKIEEHVG-TKTAVQIRSHAQKF 110 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence
MVGGLMLSPD MAAAQDQYDG SRSESVLSAN NGVSFSVSGL QLKDQFSNGN DSAPKARKPY 60 TITKQRERWT EEEHKKFLEA LKLYGRAWRK IEEHVGTKTA VQIRSHAQKF FSKVARDSNG 120 SNIISEEPID IPPPRPKRKP MRPYPRKLVH PVNKETFIVE RPTRSASPNL SVSEPENQSP 180 TSVLSVIGSD TLGSADSNTP SHSLSPVSSA ADVHGVDLNH SETPNPSLEE SGSTSPAVAE 240 NGSLPNMQLS MKLELFPVDN VDASGVSAEE VSARSLKLFG RTVLVTDSHR PSSPTVGTSK 300 SLPSDVKEEK PVQTSTPCNF TATESASGSV EHVWDNFPYG VHPGMYFMQF QNQNSNRVES 360 GSAYPVPWWS LCPKLPFPFI PFHKPQAVKE HFDGNLGDPK EVEKEGSWTG SDAGSVNDEE 420 SGDKCLASTA LSHFPSSSVT TTTSLSISDW QSARATYYAA SDPRDAVGGA CGYGDLVKAG 480 YGMATVGLSE PLFERGQICG ACFELRCVDD MRWCIPGTSI IVTATNFCAP NYGFTADGGG 540 HCNPPNKHLV LPIEAFEKIA IWKAGNMPVQ YRRIKCRKEG GIRFTIDGSN IFISALITNV 600 AGVGDIVSVK IKGSRTGWLP MGRNWGQNWH VSADLKNQPL SFEVTSSDGL TVTSYNVAPK 660 AWNFGQTFEG KQFP

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence

MVGGLMLSPD MAAAQDQYDG SRSESVLSAN NGVSFSVSGL QLKDQFSNGN DSAPKARKPY  60
TITKQRERWT EEEHKKFLEA LKLYGRAWRK IEEHVGTKTA VQIRSHAQKF FSKVARDSNG  120
SNIISEEPID IPPPRPKRKP MRPYPRKLVH PVNKETFIVE RPTRSASPNL SVSEPENQSP  180
TSVLSVIGSD TLGSADSNTP SHSLSPVSSA ADVHGVDLNH SETPNPSLEE SGSTSPAVAE  240
NGSLPNMQLS MKLELFPVDN VDASGVSAEE VSARSLKLFG RTVLVTDSHR PSSPTVGTSK  300
SLPSDVKEEK PVQTSTPCNF TATESASGSV EHVWDNFPYG VHPGMYFMQF QNQNSNRVES  360
GSAYPVPWWS LCPKLPFPFI PFHKPQAVKE HFDGNLGDPK EVEKEGSWTG SDAGSVNDEE  420
SGDKCLASTA LSHFPSSSVT TTTSLSISDW QSARATYYAA SDPRDAVGGA CGYGDLVKAG  480
YGMATVGLSE PLFERGQICG ACFELRCVDD MRWCIPGTSI IVTATNFCAP NYGFTADGGG  540
HCNPPNKHLV LPIEAFEKIA IWKAGNMPVQ YRRIKCRKEG GIRFTIDGSN IFISALITNV  600
AGVGDIVSVK IKGSRTGWLP MGRNWGQNWH VSADLKNQPL SFEVTSSDGL TVTSYNVAPK  660
AWNFGQTFEG KQFP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	572	579	RRIKCRKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	9e-59	MYB_related family protein