PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g025230.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 744aa MW: 81127.2 Da PI: 6.6543 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.5e-16 | 47 | 91 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W++I +++g ++t+ q++s+ qk+ Pd.00g025230.m01 47 RERWTEEEHKKFLEALKLYGRA-WRKIEEHVG-TKTAVQIRSHAQKF 91 78******************88.*********.************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 744 aa Download sequence |
MVGGLMLSPD MAAAQDQYDG SRSESVLSAN NGVSFSARKP YTITKQRERW TEEEHKKFLE 60 ALKLYGRAWR KIEEHVGTKT AVQIRSHAQK FFSKVARDSN GSNIISEEPI DIPPPRPKRK 120 PMRPYPRKLV HPVNKETFIV ERPTRSASPN LSVSEPENQS PTSVLSVIGS DTLGSADSNT 180 PSHSLSPVSS AADVHGVDLN HSETPNPSLE ESGSTSPAVA ENGSLPNMQL SMKLELFPVD 240 NVDASGVSAE EVSARSLKLF GRTVLVTDSH RPSSPTVGTS KSLPSDVKEE KPVQTSTPCN 300 FTATESASGS VEHVWDNFPY GVHPGMYFMQ FQNQNSNRVE SGSAYPVPWW SFCPKLPFPF 360 IPFHKPQAVK EHFDGNLGDP KEVEKEGSWT GSDAGSVNDE ESGDKCLGIE TEGKEQEPNL 420 VLQFKASANS AFSELRAGPS PGKCRKGFVP VKASLPFLRV EEVSKTLLDK PKLDLYFFGH 480 EPKLDFDDDV CLMVKQPSTA LSHFPSSSVT TTTSLSISDW QSARATYYAA SDPRDAVGGA 540 CGYGDLVKAG YGMATVGLSE PLFERGQICG ACFELRCVDD MRWCIPGTSI IVTATNFCAP 600 NYGFTADGGG HCNPPNKHLV LPIEAFEKIA IWKAGNMPVQ YRRIKCRKEG GIRFTIDGSN 660 IFISALITNV AGVGDIVSVK IKGSRTGWLP MGRNWGQNWH VSADLKNQPL SFEVTSSDGL 720 TVTSYNVAPK AWNFGQTFEG KQFP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 642 | 649 | RRIKCRKE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 4e-52 | MYB_related family protein |