PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g008890.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | Trihelix | ||||||||
Protein Properties | Length: 196aa MW: 23139.1 Da PI: 8.3108 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 38.5 | 2.9e-12 | 1 | 45 | 38 | 86 |
trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 m+ergf+r+p+qCk+kw+nl ryk ++++ + s ++cp+f++l+ Pd.00g008890.m01 1 MAERGFNRTPEQCKCKWKNLLIRYKGKETSDPE----SGRECPFFEELQ 45 89************************9999997....4667******98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence |
MAERGFNRTP EQCKCKWKNL LIRYKGKETS DPESGRECPF FEELQAVFTE RANNMQRLLL 60 ESETGSARSK KMGKRKLRPG RSSDEFSEDP DEEDEDDKKR KGERVIMPKA TNAASGTSSS 120 SIQDMLKAFF QQQQRMEMEW REMMERRAQE RRMFEQEWRQ KMEKVERESS ESSVCAAADA 180 PLQRIKEMNG MKFNYF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 77 | KKMGKRKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 8e-15 | Trihelix family protein |