PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT5G01380.1

Common Name

GT3A, GT-3A, T10O8.90

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Trihelix

Protein Properties

Length: 323aa MW: 38272.7 Da PI: 6.523

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT5G01380.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	79.9	3.5e-25	51	133	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e+++L+++r+e+++++ ++k++k lWe v++km+++gf rs++qCk+kw+nl +ryk+++++e + ++++p++++++ AT5G01380.1 51 QWSIEETKELLAIREELDQTFMETKRNKLLWEVVAAKMADKGFVRSAEQCKSKWKNLVTRYKACETTEPDA---IRQQFPFYNEIQ 133 7******************************************************************95...56689*9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.5E-4	48	110	IPR001005	SANT/Myb domain
CDD	cd12203	1.27E-21	50	112	No hit	No description
Pfam	PF13837	9.8E-21	51	135	No hit	No description
PROSITE profile	PS50090	8.002	52	108	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000293	anatomy	guard cell

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MDRRNPFQHH HHHHQLHHHL IQQQQLPPPP LSTTATMDPG GGGGGGERIP QWSIEETKEL 60 LAIREELDQT FMETKRNKLL WEVVAAKMAD KGFVRSAEQC KSKWKNLVTR YKACETTEPD 120 AIRQQFPFYN EIQSIFEARM QRMLWSEATE PSTSSKRKHH QFSSDDEEEE VDEPNQDINE 180 ELLSLVETQK RETEVITTST STNPRKRAKK GKGVASGTKA ETAGNTLKDI LEEFMRQTVK 240 MEKEWRDAWE MKEIEREKRE KEWRRRMAEL EEERAATERR WMEREEERRL REEARAQKRD 300 SLIDALLNRL NRDHNDDHHN QGF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
At.33561	0.0	root\| seed

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	145357511	0.0
Genevisible	251114_at	0.0
Expression Atlas	AT5G01380	-
AtGenExpress	AT5G01380	-
ATTED-II	AT5G01380	-

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in roots and flower buds. {ECO:0000269\|PubMed:15044016}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269\|PubMed:15044016}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00481	DAP	27203113	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT5G01380.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Interaction ? help Back to Top
Source	Intact With
BioGRID	AT5G01380
IntAct	Search Q9SDW0

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT5G01380

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY271677	0.0	AY271677.1 Arabidopsis thaliana transcription factor GT-3a (GT3A) mRNA, complete cds.
GenBank	BT028926	0.0	BT028926.1 Arabidopsis thaliana At5g01380 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_195758.1	0.0	Homeodomain-like superfamily protein
Swissprot	Q9SDW0	0.0	TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBL	A0A178UAE8	0.0	A0A178UAE8_ARATH; Uncharacterized protein
STRING	AT5G01380.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2215	28	70
Representative plant	OGRP2262	15	35

Link Out ? help Back to Top
Phytozome	AT5G01380.1
Entrez Gene	831895
iHOP	AT5G01380
wikigenes	AT5G01380

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Ayadi M,Delaporte V,Li YF,Zhou DX Analysis of GT-3a identifies a distinct subgroup of trihelix DNA-binding transcription factors in Arabidopsis. FEBS Lett., 2004. 562(1-3): p. 147-54 [PMID:15044016] Park HC, et al. Pathogen- and NaCl-induced expression of the SCaM-4 promoter is mediated in part by a GT-1 box that interacts with a GT-1-like transcription factor. Plant Physiol., 2004. 135(4): p. 2150-61 [PMID:15310827] Lee BH,Henderson DA,Zhu JK The Arabidopsis cold-responsive transcriptome and its regulation by ICE1. Plant Cell, 2005. 17(11): p. 3155-75 [PMID:16214899] Taki N, et al. 12-oxo-phytodienoic acid triggers expression of a distinct set of genes and plays a role in wound-induced gene expression in Arabidopsis. Plant Physiol., 2005. 139(3): p. 1268-83 [PMID:16258017] Yu HJ,Hogan P,Sundaresan V Analysis of the female gametophyte transcriptome of Arabidopsis by comparative expression profiling. Plant Physiol., 2005. 139(4): p. 1853-69 [PMID:16299181] Ma S,Gong Q,Bohnert HJ Dissecting salt stress pathways. J. Exp. Bot., 2006. 57(5): p. 1097-107 [PMID:16510518] Efroni I, et al. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Dev. Cell, 2013. 24(4): p. 438-45 [PMID:23449474] Gadeyne A, et al. The TPLATE adaptor complex drives clathrin-mediated endocytosis in plants. Cell, 2014. 156(4): p. 691-704 [PMID:24529374]