PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP045120.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 395aa MW: 43043.2 Da PI: 10.4258

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP045120.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.1	7.1e-16	93	176	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v +L+ea++ ++ +r+klk+++We+v+ ++ ++ ++++qCk+k+e+++kry+ + +++ + s++p++ +l+ PCP045120.1 93 EWSEGAVSTLLEAYETKWALRNRAKLKGHDWEDVATHVssraNCTKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYPRLD 176 5***********************************854444555566679**************99997......4699999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MQSEAVAPKG ITTQLLTQVV MNPPKVYGEK KGINKAKAKI RRAQKGKLCL NGGSILDGGG 60 EEQKEIDESP PRSKPAQQPP LGGSGSDRLK RDEWSEGAVS TLLEAYETKW ALRNRAKLKG 120 HDWEDVATHV SSRANCTKSP KTQTQCKNKI ESMKKRYRSE SATADGSSWP LYPRLDLLLR 180 GSGPSPTAAA AAAAAAAATV PPSLQPPLPL HPPLPQNNHP LMLLEPSAPA PLPPPPPLPA 240 PPPLMGTAQN SFGSNGVDHR VAKEDGGGMK LSDHASDKNP LEVDSSTPAL YSDKEKLRSK 300 RMKRKIEKKK RRRREEVEVA ESIRWLAEVV VRSEQARMDT MREIERMRAE AEAKRGEMDL 360 KRTEIIANTQ LEIARLFAAA GVGKGVDSSL RIGRS

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MQSEAVAPKG ITTQLLTQVV MNPPKVYGEK KGINKAKAKI RRAQKGKLCL NGGSILDGGG  60
EEQKEIDESP PRSKPAQQPP LGGSGSDRLK RDEWSEGAVS TLLEAYETKW ALRNRAKLKG  120
HDWEDVATHV SSRANCTKSP KTQTQCKNKI ESMKKRYRSE SATADGSSWP LYPRLDLLLR  180
GSGPSPTAAA AAAAAAAATV PPSLQPPLPL HPPLPQNNHP LMLLEPSAPA PLPPPPPLPA  240
PPPLMGTAQN SFGSNGVDHR VAKEDGGGMK LSDHASDKNP LEVDSSTPAL YSDKEKLRSK  300
RMKRKIEKKK RRRREEVEVA ESIRWLAEVV VRSEQARMDT MREIERMRAE AEAKRGEMDL  360
KRTEIIANTQ LEIARLFAAA GVGKGVDSSL RIGRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	308	313	KKKRRR
2	308	314	KKKRRRR
3	309	314	KKKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-59	Trihelix family protein