PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP044707.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 840aa    MW: 92431.4 Da    PI: 6.6399
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP044707.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.8e-182683457
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   ++t+eq+e+Le++++++++ps  +r++L +++    +++ rq+kvWFqNrR +ek+
  PCP044707.1 26 YVRYTSEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPRQIKVWFQNRRCREKQ 83
                 5789****************************************************97 PP
2START138.95.2e-441643932204
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHH.HHHHHHCCCGG....................CT-TT-SE CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvla.llveellddke....................qWdetlak 78 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   + +++  +                      W +++++
  PCP044707.1 164 VAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTkAAYFHVIRFMNhldlkliihkqiaeilkdrpSWFRDCRS 261
                  789**************************************9999999999999998844555555555577899999999999999999*******9 PP

                  EEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
        START  79 aetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehv 170
                   e+    + g  g+++l++++++a+++l+p Rd +++Ry+ +l  g++v++++S++     p+    s++vR+ +lpSg+li+p+++g+s v++v+h 
  PCP044707.1 262 LEVFTMFTAGngGTIELIYTQTYAPTTLAPaRDLWTLRYTTTLDNGSFVVCERSLSGSGAGPNpasASQFVRGAMLPSGYLIRPCEGGGSIVHIVDHL 359
                  999999888888********************************************988888878999****************************** PP

                  E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
        START 171 dlkgrlphwllrslvksglaegaktwvatlqrqc 204
                  +l++++++++lr+l++s+ + +++++ a+l++ +
  PCP044707.1 360 NLEAWSVPEVLRPLYESSKVVAQRMTIAALRYIR 393
                  *****************************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    
MAMAVAHHRE SSSGSSINKH LDAGKYVRYT SEQVEALERV YAECPKPSSL RRQQLIRECP  60
ILSNIEPRQI KVWFQNRRCR EKQRKESSRL QTVNRKLSAM NKLLMEENDR LQKQVSQLVC  120
ENGYMRQQLH TASAATTDAS CDSVVTTPQH SLRDANNPAG LLSVAEETLA EFLSKATGTA  180
VDWVQMPGMK PGPDSVGIFA ISQSCSGVAA RACGLVSLEP TKAAYFHVIR FMNHLDLKLI  240
IHKQIAEILK DRPSWFRDCR SLEVFTMFTA GNGGTIELIY TQTYAPTTLA PARDLWTLRY  300
TTTLDNGSFV VCERSLSGSG AGPNPASASQ FVRGAMLPSG YLIRPCEGGG SIVHIVDHLN  360
LEAWSVPEVL RPLYESSKVV AQRMTIAALR YIRQIAEETS GEVVYSLGRQ PAVLRTFSQR  420
LIRGFNDAVN GFNDDGWSLV NCDGADDVII AVNSTKNLTS TSNHANSLAL LGGVLCAKAS  480
MLLQNVPPAV LVRFLREHRS EWADFNVDAY SAVSMKAGAY AYPGMRPTRF TGGQIIMPLG  540
HTIEQEELLE VVRLEGHSLT QEDAFASRDI HLLQICSGVD ENAIGACSEL VFAPIDEMFP  600
DDAPLLPSGF RIIPLDSKTG DSKDTLNTHR TLDLTSSLEV GSTTSNAAGE LTTFHNTRSV  660
LTIAFQFPFD NSLQENVTNM ARQYVRSVIS SVQRVAMAIS PSGLSPYHVG GELLRHDSLG  720
GDSMLKHLWH HQDAILCCSL KSMPVFIFAN QAGLDMLETS LVALQDISLD KIFDESGRKT  780
LCADFAKLMN QGFAYLPAGI CMSTMGRHVS YEQAIAWKVV AAEENSVHCL AFCFINWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein