PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP044580.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 584aa MW: 63334 Da PI: 8.3383

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP044580.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48	3.4e-15	279	366	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Liea e+ +l+rg+lk+++W+ev++++ +++ ++ +qCk++++ ++k+yk +k + + + s++p++++l+ PCP044580.1 279 CWSEGATAVLIEAWGERYLELSRGNLKQKHWKEVADVVssreNYGKIPKTDIQCKNRIDTVKKKYKLEKSKIGAG--GGPSKWPFYERLD 366 7***********************************8766667789999**************999997..67779****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence
MLVSRLSAVR TQMIKHLVKA PLTSAPKTGN FSGRYSYIFH NPKHQTYSST TAHEEGDKKV 60 EEISVTFVDK DEMEKHIKIP VGMSILEAAH ENDIELEGAC EGSCACSTCH VIVRDMEYYN 120 KLEDPTDEEN DMLDLAFGLT ETSRLGCQMV AKPELDGICL ELPSATRNFA VDSASSQISD 180 SLRTGAVYYR ILDLDRTDPD PRTIAVVSME EDDEIQSPAS GGSRSPASTR QNGRITVTVA 240 VPPAQIQAPT PTQNKILTLA LPSSAQQQGR SSGGGREDCW SEGATAVLIE AWGERYLELS 300 RGNLKQKHWK EVADVVSSRE NYGKIPKTDI QCKNRIDTVK KKYKLEKSKI GAGGGPSKWP 360 FYERLDHLIG PSGAKVGPGS AGGGGSGGFS GHSKKMPVGL RHSQFLGGRA KREGKIRQRD 420 LVESDSDESR EPSPISTDNE IFERKRRTAN ANANVNVNVN ANASVRKGVG GGLRPCAVGR 480 EKGGGGGGGG CGSSVRELTR AILKFGEAYE HAESAKLQQV VEMEKQRMKF AKELELQRLQ 540 FFMKTQVEIS QLKSGSGRKS GVNGVGNASN HRSSNNNNNS DCSS

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence

MLVSRLSAVR TQMIKHLVKA PLTSAPKTGN FSGRYSYIFH NPKHQTYSST TAHEEGDKKV  60
EEISVTFVDK DEMEKHIKIP VGMSILEAAH ENDIELEGAC EGSCACSTCH VIVRDMEYYN  120
KLEDPTDEEN DMLDLAFGLT ETSRLGCQMV AKPELDGICL ELPSATRNFA VDSASSQISD  180
SLRTGAVYYR ILDLDRTDPD PRTIAVVSME EDDEIQSPAS GGSRSPASTR QNGRITVTVA  240
VPPAQIQAPT PTQNKILTLA LPSSAQQQGR SSGGGREDCW SEGATAVLIE AWGERYLELS  300
RGNLKQKHWK EVADVVSSRE NYGKIPKTDI QCKNRIDTVK KKYKLEKSKI GAGGGPSKWP  360
FYERLDHLIG PSGAKVGPGS AGGGGSGGFS GHSKKMPVGL RHSQFLGGRA KREGKIRQRD  420
LVESDSDESR EPSPISTDNE IFERKRRTAN ANANVNVNVN ANASVRKGVG GGLRPCAVGR  480
EKGGGGGGGG CGSSVRELTR AILKFGEAYE HAESAKLQQV VEMEKQRMKF AKELELQRLQ  540
FFMKTQVEIS QLKSGSGRKS GVNGVGNASN HRSSNNNNNS DCSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	6e-48	Trihelix family protein