PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP044016.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 733aa    MW: 79660.8 Da    PI: 6.7485
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP044016.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3727.3e-23145247199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  f+k+lt sd++++g +++p++ ae++       +  ++ s++l+ +d++g +W++++iy  ++++r++lt+GW+ Fv+ ++L +gD v+F   + +++
  PCP044016.1 145 FCKTLTASDTSTHGGFSVPRRAAEDCfppldytQ--QRPSQELVAKDLHGLEWRFRHIYrVGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGDDG 238
                  99****************************9743..345679*****************7788888*************************..34899 PP

                  ..EEEEE-S CS
           B3  91 elvvkvfrk 99 
                  el+++++r+
  PCP044016.1 239 ELRLGIRRA 247
                  99****996 PP
2Auxin_resp107.41.6e-35273353282
   Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                   +a+  k++F+v+YnPr+s+seF+++ +k++++l++ +s+GmR+km+feted++err+ G ++ +s+ldpvrWp+SkWr+L
  PCP044016.1 273 LNAIFAKNAFNVYYNPRSSSSEFIIPSHKFLRSLDHCFSAGMRIKMRFETEDAAERRYIGFITRISELDPVRWPGSKWRCL 353
                  5788899*************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    
MAGLIDLNSA TEDEQTPSSG SPSSASSVSD ALGSSASVCM ELWHACAGPL ISLPKKGSVV  60
VYLPQGHLEQ VSDFPTSAYD LPPHLFCRVV DVKLHAETGT DDVFARVSLV PESEEIEHRL  120
REGETDADAE DDVEAMGTSA TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYTQQR  180
PSQELVAKDL HGLEWRFRHI YRVGQPRRHL LTTGWSAFVN KKKLVSGDAV LFLRGDDGEL  240
RLGIRRAAQF KSSATCPTLC SQQLNCSAIT DVLNAIFAKN AFNVYYNPRS SSSEFIIPSH  300
KFLRSLDHCF SAGMRIKMRF ETEDAAERRY IGFITRISEL DPVRWPGSKW RCLVVRWDDI  360
DTSKHSRVSP WEVEPSGSVS SSHTLMATGL KRSRIGLSAT KPECSVPNGG IGTSDFGESL  420
RFQKVLQGQE ISGFDTPFSG LGGLNSLPSE ARRVFHGSGG SGIAAGGNGL RQSLVDSEIA  480
SKGIGFGESF RFRKVLQGQE ILPSSPYGRA PASNEAHEYG GPGIYDGFHV PGFRNGWSTM  540
MQSNNTHVHS SAPSVQVSSP SSVLMFQQAV NPVVEFNSVY NGHNPEDHRV NRTLHVSEHD  600
GGRQTSSSFG ELNFSREDRG GTHSYNQHGI SPHPGTSQST ISGSQDSISP IKGSCRLFGF  660
SLSEDKCVPD QEGNPNVGVR FHSKPSLMTS TVGITSSGMF MSRIGLLTGA EKGWKAVYKD  720
SDHPVLVADD LRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.10.0ARF family protein