PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP041623.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 679aa    MW: 77397.3 Da    PI: 6.77
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP041623.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS383.32.9e-1173076773374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lL++cA+a +s d++ a++lL+++++++sp+gd+++Rla+yf+ +L+arl++     y+ l + +t+    +e l+a++++++ +P+  + h+  N+
  PCP041623.1 307 TLLTQCAQATASYDQRSASELLKQIRKHSSPSGDATERLAHYFADGLEARLVGARIPSYSPLLSIQTP---AAEILKAHQMYVNYCPFKHMLHFFSNR 401
                  79***************************************************777777777777776...89************************* PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  +I + +e+++r+Hi+Df+is+G+QWp+L+q L++R++gpps+R+T+++ p++g   +e++eetg+rL+k+A++++v+fe++v  a+++e+l+le+L++
  PCP041623.1 402 TIIKLAEKATRLHIVDFGISYGFQWPCLIQRLSERNGGPPSIRLTAIELPQPGfrPTERVEETGRRLKKYAARFNVQFEYKV-FAQKWETLQLEDLKI 498
                  ****************************************************9****************************9.7************** PP

         GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                  +++E ++Vn++++l++++de+v ++s+rd vLkl+++++P+++++   +  +ns+ F++rf eal+++sa+fd++ea++pre+e+r++ E+++ g++i
  PCP041623.1 499 DRNELTVVNCMHRLKHIPDETVVVSSPRDLVLKLIRRINPDLFIHGVVNGTYNSPFFVTRFKEALYHFSAMFDMFEATIPREDEQRMMFEKAIYGKDI 596
                  ************************************************************************************************** PP

         GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +nvvaceg er+er et+++W+ r ++aGFk+vpl+++  k +k +l+ ++  d +r++e+ +++++gWk+r ++ + +W+
  PCP041623.1 597 MNVVACEGLERVERPETYKQWQVRYHRAGFKQVPLNQELLKRVKIMLKAMHyHDDFRIDEDGDWMLQGWKGRIIFGLAFWK 677
                  ***********************************************99998999*************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    
MDTLFERFSS PMKNFQFGST QFQVNHEPTN PLFLPTTPEH PTDSGFSNPG SDGDSFDMSD  60
YNHSVIKYIS DILLEEDLED KPCMLQNCLA LQAAEKSFYD VLNPKDPPSP DQPPHPVYQS  120
FEHSDDDSSQ SYSSNDSMAA KADSVFDSSE TLLVSNSTSG NFGGVGEAGN LVPNLKHGII  180
DLERYQLVPP GDNTLRRNSA PEPENDGNIS ANRLKGKKNH RREDGDYADG GRSNKQSAAL  240
GDDTEPQEMF DRVLLCHVNH THASCIRDKP LSSEGSEKLQ PKKQSKGSKT TRLKKQNNYQ  300
EVVDISTLLT QCAQATASYD QRSASELLKQ IRKHSSPSGD ATERLAHYFA DGLEARLVGA  360
RIPSYSPLLS IQTPAAEILK AHQMYVNYCP FKHMLHFFSN RTIIKLAEKA TRLHIVDFGI  420
SYGFQWPCLI QRLSERNGGP PSIRLTAIEL PQPGFRPTER VEETGRRLKK YAARFNVQFE  480
YKVFAQKWET LQLEDLKIDR NELTVVNCMH RLKHIPDETV VVSSPRDLVL KLIRRINPDL  540
FIHGVVNGTY NSPFFVTRFK EALYHFSAMF DMFEATIPRE DEQRMMFEKA IYGKDIMNVV  600
ACEGLERVER PETYKQWQVR YHRAGFKQVP LNQELLKRVK IMLKAMHYHD DFRIDEDGDW  660
MLQGWKGRII FGLAFWKPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein