PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP041493.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HRT-like

Protein Properties

Length: 464aa MW: 51924.6 Da PI: 9.4246

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP041493.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	55	1.4e-17	270	299	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG+ +dGsvC++ Pv+gR+RC+eHKGmR PCP041493.1 270 ICGADVGDGSVCRTAPVPGRQRCAEHKGMR 299 8****************************9 PP
2	HRT-like	29.7	1.1e-09	329	349	2	22
HRT-like 2 CGviledGsvCkrqPvkgRKR 22 CG+il dGs+C r+P++gRKR PCP041493.1 329 CGFILADGSPCGRHPIQGRKR 349 ********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MEAGNSTVAV SRLKREDCER PKNDSRFSNW KILVGPSDWE DHSLGKEGAE RYRVHNLPKK 60 ESPGVYELGV SGCSSLGRES GKLDPGCVVP VYLGQADNAR TRLQQYGRSG AHLGNGSSTD 120 HPTDCVRREM GRGLFEDILS RGYPIVYRWA PMENKSDALK TENQLLDTYD YAWNRTNNGA 180 RRPDDVHRKL KNISSSTTQR TDIAQELLPS SQKKVGIRIE SSKPISTGDK FGAYDDREIH 240 NSPCRVFKLG RAQPRLVSNR SITEENTSII CGADVGDGSV CRTAPVPGRQ RCAEHKGMRA 300 KGSTRVGISN SNVDSQYRFI SNHDSVEPCG FILADGSPCG RHPIQGRKRR IEWRTSCGSR 360 TRGRWRLHGT RGSRTCLRWT YTQRRGLEMG CCSTTRQGGG GGDSGDREQR VNTPPRDAGW 420 HREGRRRPAP EDRQRGFDRC EREYFGECED WGGRKDWGGV SCAD

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MEAGNSTVAV SRLKREDCER PKNDSRFSNW KILVGPSDWE DHSLGKEGAE RYRVHNLPKK  60
ESPGVYELGV SGCSSLGRES GKLDPGCVVP VYLGQADNAR TRLQQYGRSG AHLGNGSSTD  120
HPTDCVRREM GRGLFEDILS RGYPIVYRWA PMENKSDALK TENQLLDTYD YAWNRTNNGA  180
RRPDDVHRKL KNISSSTTQR TDIAQELLPS SQKKVGIRIE SSKPISTGDK FGAYDDREIH  240
NSPCRVFKLG RAQPRLVSNR SITEENTSII CGADVGDGSV CRTAPVPGRQ RCAEHKGMRA  300
KGSTRVGISN SNVDSQYRFI SNHDSVEPCG FILADGSPCG RHPIQGRKRR IEWRTSCGSR  360
TRGRWRLHGT RGSRTCLRWT YTQRRGLEMG CCSTTRQGGG GGDSGDREQR VNTPPRDAGW  420
HREGRRRPAP EDRQRGFDRC EREYFGECED WGGRKDWGGV SCAD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	6e-80	HRT-like family protein