PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP039481.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 338aa    MW: 38579.7 Da    PI: 6.263
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP039481.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-12180205126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  y   +C+++ +tG+C yGd+CkF+H+
  PCP039481.1 180 YQPDICKDYKETGYCGYGDSCKFMHD 205
                  67789********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MADSGENKEP GEVCNFFRKP SRRQNIRKRR TDEDDEEDDS KSGTSLSNQR KAQKSDGKLF  60
FSTGPSKTFV SDDRAVFEFE SSKEIQVEND SRATATMETE TEFSRDARAV RERVLKQAEE  120
ALKGKGKSTG NEKLYKGIHG YTDYKAGFRR ELTVASEKAG GAHGPLRASA HIRTSTRFDY  180
QPDICKDYKE TGYCGYGDSC KFMHDRGDYK SGWQMEKEWD EAEKARKRKL AMGEDDVDET  240
EEDDDDEDDG GLPFACFICR QPFVDPVVTK CNHYFCEHCA LKHHSKNKKC FVCDKPTLGI  300
FNTAHEIRKR MAAEGTGKFT FYSGRVKDEF IDTETVRM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-160C3H family protein