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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP035296.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | C3H | ||||||||
Protein Properties | Length: 406aa MW: 44601.6 Da PI: 7.8619 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.1 | 4.1e-10 | 91 | 115 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ PCP035296.1 91 FKTKLCCKFRA-GTCPYVTNCNFAHS 115 69*********.*************8 PP | |||||||
2 | zf-CCCH | 43.3 | 6.2e-14 | 224 | 249 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg PCP035296.1 224 WKTRICNKWELTGYCPFGSKCHFAHG 249 8************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence |
MDYGRESNAV QVITGNSGGD IWSGDQAVWA TEDEYRVWNN GDAMADTMSN SSYDQRQSQS 60 RSGSEPPNKK SRNSQDATSS NRSKAIGKMF FKTKLCCKFR AGTCPYVTNC NFAHSIEELR 120 RPPPNWQDIV AAHEEEKAVS SEPREEYQIP IVSTGFGVET PRSYKGRHCK KFYTEEGCSY 180 GDNCTFLHDE QSKNRESVAI SLGPGGYGGA AAAVNGANNK PSNWKTRICN KWELTGYCPF 240 GSKCHFAHGV AELAVLLGLP YILVSVSLHG CLMFSISAVV LFLVLRRNCV LSSKSNPHSQ 300 FIVALQGAEW GWTXLHRYGG GLVEGETRDS SSVAPDNKQG AMPSKTPGDA VVVSVPLVSH 360 SDVYHLGVPS QRSSIVIQRS GPRAHQKWKG PDKISRIYGD WIDDIE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 2e-87 | C3H family protein |