PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP034669.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 461aa    MW: 49928.3 Da    PI: 7.0595
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP034669.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-07307327526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C++f++ G C++Gd C +aHg
  PCP034669.1 307 PCPDFRK-GACRRGDMCEYAHG 327
                  8******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    
MCNGSDQIKP KSSPAASLIS VDESRLSNTA MNHLTVETED AFASLLELAA NNDIESFKRS  60
IEQDPSAIDE IGLWYCRQKG SKQMVNEQRT PLMVAATYGS IDVVKLILSL SDADVNQACG  120
RDRSTALHCA ASGGAENAVD CVKLLLEAGA DPNSLDANGH RPIDVIVVPP RLQNVKLAIE  180
ELLVINGTAG EKTLTVSTRT IHSTSPPLSA SPENGSPSAL DFTCSPTKSK FYSSLSSASE  240
KKEYPVDPSL PDIKNSIYST DEFRMYSFKV RPCSRAYSHD WTECPFVHPG ENARRRDPRK  300
FHYSCVPCPD FRKGACRRGD MCEYAHGVFE CWLHPAQYRT RLCKDGTTCA RRVCFFAHTT  360
EELRPLYVST GSAVPSPRSS TSGASAMDFA AAMSLLPGSP SSVNVMSPSP FTPPMSPSAN  420
GMSHSSLGWP QPNVPALHLP GSNLQSSRLR SSLCARDMPV G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0C3H family protein