PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP033132.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 231aa MW: 26662.7 Da PI: 6.686 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.9 | 4.9e-20 | 34 | 86 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq+ Le+ Fe ++++ +++ +LA++lgL+ rqV +WFqNrRa++k PCP033132.1 34 TRRFSDEQISLLESIFEADSKLEPRRKVQLARELGLQPRQVAIWFQNRRARWK 86 468*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 124.2 | 6.1e-40 | 33 | 124 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 + rr+s+eq++lLE+ Fe+++kLep+rKv+lareLglqprqva+WFqnrRAR+k+kq+E+dy++L++ yd+l+++ e+L++e+++L +l++ PCP033132.1 33 NTRRFSDEQISLLESIFEADSKLEPRRKVQLARELGLQPRQVAIWFQNRRARWKSKQIEQDYRSLREDYDKLASRFESLKEEKQSLIMQLQK 124 579************************************************************************************99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence |
MDRRKEECYE EENLDYGIEP QSAMKRKKNK SKNTRRFSDE QISLLESIFE ADSKLEPRRK 60 VQLARELGLQ PRQVAIWFQN RRARWKSKQI EQDYRSLRED YDKLASRFES LKEEKQSLIM 120 QLQKLHDLVG TSRAGAPTED SLANQTADGS SYKDGNCKTT ARVRLEEALE KTGAIDKHTS 180 NDVGGEFGDE RHELLNIGQL DASVTPLGLH GLDSGNILFD RCNSHWLNFW T |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 25 | 36 | KRKKNKSKNTRR |
2 | 81 | 89 | RRARWKSKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61890.1 | 1e-41 | HD-ZIP family protein |