PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP032012.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 580aa MW: 63377.3 Da PI: 7.6154

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP032012.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.5	1.1e-15	22	113	2	72
trihelix 2 WtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 Wt e++ Liea++ ++er ++ ++ +W++v ++++++g+ r+++qC++kw+nl ++ykk++e e+k t PCP032012.1 22 WTVGETMILIEAKKMDDERRMKRTgggeggssgggtdqttrsmskPAELRWKWVEDYCWKKGCLRNQNQCNDKWDNLMRDYKKVREYERKIT 113 ***********96666555433345566666667777777766999**************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence
MAEQGGNGTN RVIMRDYRKG NWTVGETMIL IEAKKMDDER RMKRTGGGEG GSSGGGTDQT 60 TRSMSKPAEL RWKWVEDYCW KKGCLRNQNQ CNDKWDNLMR DYKKVREYER KITSVGEGKG 120 EEGSASYWKL EKNERKERNL PTNMVPQIYE ALVDVVERRE AAAAAGYQIR GHEVVGGASV 180 SGPNVGINPN IGYGLERPII NTTNVHQQPS SSLPSPPVLQ HHHHHQISVP TIAALPLLPP 240 APLAAQPPPA LPYAQVMPTV DSDTSEHSNS PAKRRRRASG RGGGGGEDQG GTSGTVSASI 300 SSEVGTAIAR GASMIAEALQ GXSFLDLPSS SSASASASAC IRPHLSFFVN VCVLLLQILL 360 NSFDLQFSIH RTHGHHWEQE HQCQIVMFDI LLQVLLGDVG AGKSSLVLRF VKGQFVEFQE 420 STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVY DLTNQASFER 480 AKKWVLELKS QGNPNMVMAL AGNKADLVEA RKVAAEDAQS YAQENGLFFL ETSAKTADNV 540 NDIFYEIAKR LPRVQPVQNP AGMVLMDRPS ERVAGSSCCS

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence

MAEQGGNGTN RVIMRDYRKG NWTVGETMIL IEAKKMDDER RMKRTGGGEG GSSGGGTDQT  60
TRSMSKPAEL RWKWVEDYCW KKGCLRNQNQ CNDKWDNLMR DYKKVREYER KITSVGEGKG  120
EEGSASYWKL EKNERKERNL PTNMVPQIYE ALVDVVERRE AAAAAGYQIR GHEVVGGASV  180
SGPNVGINPN IGYGLERPII NTTNVHQQPS SSLPSPPVLQ HHHHHQISVP TIAALPLLPP  240
APLAAQPPPA LPYAQVMPTV DSDTSEHSNS PAKRRRRASG RGGGGGEDQG GTSGTVSASI  300
SSEVGTAIAR GASMIAEALQ GXSFLDLPSS SSASASASAC IRPHLSFFVN VCVLLLQILL  360
NSFDLQFSIH RTHGHHWEQE HQCQIVMFDI LLQVLLGDVG AGKSSLVLRF VKGQFVEFQE  420
STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVY DLTNQASFER  480
AKKWVLELKS QGNPNMVMAL AGNKADLVEA RKVAAEDAQS YAQENGLFFL ETSAKTADNV  540
NDIFYEIAKR LPRVQPVQNP AGMVLMDRPS ERVAGSSCCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-55	Trihelix family protein