PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP030915.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 677aa MW: 74860.6 Da PI: 8.4778

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP030915.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.3	1.5e-07	579	628	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ PCP030915.1 579 RRPFSVTEVEALVQAVEKLGTGRWRDVKLRAFdsaKHRTYVDLKDKWKTL 628 678999******************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence
MVLQKRLDYG FNGYQVPPTP KASRSARKRR AVHKVVKDNA MGAFDLLATV AGKLLIEGES 60 SPASSHTSVG KDQCAGSKEH CLDGDKPLKV EPCDQGSCDR IPLVSDHISQ GQNLSSHTKA 120 SPVHQNECHS VMTTSNCSER FVSDMLVSGK CKNEMGRLTG KFEAGSAGNR ESGDCKLDGE 180 VKILVNDETK SGEVLTGTGD DMCSLEDPVV WEGEPPPLDS SDSSTKVPMY VDHIPQRSFP 240 ASRDDVNVVS RDDDENSSGC THPSTAMKYS RPAPSRIGDQ RIRKLLASKY WKVAPKMKDE 300 THSNSYRDMK PNYHNRKNCY KRQRSQMNMP FKKRRLFDHS TVPNPDEGIS REGFFDLREK 360 GINASASCSK MQATGTSSSV AGQHPSFQSR NSHVKLRIKS FRIPELFIEI PETATVDSLK 420 KTVMEAVSAV LGGGLCVGVL LRGKKVRDDN KTLLQTGISQ DDHLDSVGFS LEPNPSRNPP 480 PLCSDDSPCM LPCDELKPLI RYQPGPTSEP IPEPHMASFG IFIESDHDSA PSPTEMSAEK 540 STTDSKALVA VPDMSVDALA VVPGNRKSRR FDIGQRRIRR PFSVTEVEAL VQAVEKLGTG 600 RWRDVKLRAF DSAKHRTYVD LKDKWKTLVH TARISPQQRR GEPVPQELLD RVLTAHAYWS 660 QQQAKQQLKQ PETCVLV

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence

MVLQKRLDYG FNGYQVPPTP KASRSARKRR AVHKVVKDNA MGAFDLLATV AGKLLIEGES  60
SPASSHTSVG KDQCAGSKEH CLDGDKPLKV EPCDQGSCDR IPLVSDHISQ GQNLSSHTKA  120
SPVHQNECHS VMTTSNCSER FVSDMLVSGK CKNEMGRLTG KFEAGSAGNR ESGDCKLDGE  180
VKILVNDETK SGEVLTGTGD DMCSLEDPVV WEGEPPPLDS SDSSTKVPMY VDHIPQRSFP  240
ASRDDVNVVS RDDDENSSGC THPSTAMKYS RPAPSRIGDQ RIRKLLASKY WKVAPKMKDE  300
THSNSYRDMK PNYHNRKNCY KRQRSQMNMP FKKRRLFDHS TVPNPDEGIS REGFFDLREK  360
GINASASCSK MQATGTSSSV AGQHPSFQSR NSHVKLRIKS FRIPELFIEI PETATVDSLK  420
KTVMEAVSAV LGGGLCVGVL LRGKKVRDDN KTLLQTGISQ DDHLDSVGFS LEPNPSRNPP  480
PLCSDDSPCM LPCDELKPLI RYQPGPTSEP IPEPHMASFG IFIESDHDSA PSPTEMSAEK  540
STTDSKALVA VPDMSVDALA VVPGNRKSRR FDIGQRRIRR PFSVTEVEAL VQAVEKLGTG  600
RWRDVKLRAF DSAKHRTYVD LKDKWKTLVH TARISPQQRR GEPVPQELLD RVLTAHAYWS  660
QQQAKQQLKQ PETCVLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-113	MYB_related family protein