PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP030407.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 334aa MW: 37796.5 Da PI: 5.2664

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP030407.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.7	6.4e-21	79	132	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ Fe ++++ e++++LAkklgL+ rqV vWFqNrRa++k PCP030407.1 79 KKRRLTPDQVHMLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 132 5678*************************************************9 PP
2	HD-ZIP_I/II	135.2	2.3e-43	78	169	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ +qv++LE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l ++ +++ ke+++L++++ PCP030407.1 78 EKKRRLTPDQVHMLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLEQDYDLLKSSYDTLLSNYDSILKENQKLKSQVV 169 69**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MMEPGRFFFE PSPSSAVCQQ GGGGNMLFLG NPDHVFRGPR SMMGLMDQES SRRRPFFSSS 60 SSQDEPFDEE YYDEQLPEKK RRLTPDQVHM LEKSFETENK LEPERKTQLA KKLGLQPRQV 120 AVWFQNRRAR WKTKQLEQDY DLLKSSYDTL LSNYDSILKE NQKLKSQVVS INEKLGGKEQ 180 ANSTKAAAFA ADDHADEKRG PLLPAGDQMT EVVPIISLQY SCSVKVEDRL SSGSGGSAVV 240 DEAEGPQPVD SSDSYNFPNN IHNYYPHDHD THHHHHQYTP PHYHVEHRRR GVLSEGDDGS 300 DDGQGYFSDV FAAAAAEQQA AQEEGVSLNW WGWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	135	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	6e-72	HD-ZIP family protein