PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP030071.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | LBD | ||||||||
Protein Properties | Length: 248aa MW: 26970.2 Da PI: 6.78 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.6 | 3.4e-41 | 8 | 106 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk++rrkC+++Cv+apyfp +qp+kfanvh ++Gasnv k+l++l+ reda++sl+yeAear+rdPvyG+vg+i+ lq++l+q++++l +k PCP030071.1 8 PCAACKFQRRKCTQECVFAPYFPPDQPQKFANVHTVYGASNVGKILNELNVAYREDAVTSLAYEAEARLRDPVYGCVGFISFLQNRLKQVQTDLYNAK 105 7********************************************************************************************98887 PP DUF260 99 e 99 + PCP030071.1 106 K 106 6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence |
MSSNTHSPCA ACKFQRRKCT QECVFAPYFP PDQPQKFANV HTVYGASNVG KILNELNVAY 60 REDAVTSLAY EAEARLRDPV YGCVGFISFL QNRLKQVQTD LYNAKKDLSA YIGPQALLIP 120 LLGATTGPPP QQGCRVGQLL IRDQHQQQLF EAHQQELVRF NINGMDAAAS LVNGNGFNQI 180 PAAAASNGVV SGSLGLGGAF DNNHYNQIEQ QAAAHHQNSL DHQLQAQLML QPHPAALESQ 240 QKSDGEGS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 2e-61 | LBD family protein |