PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP029440.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 351aa MW: 38196 Da PI: 10.1843

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP029440.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.8	4.4e-16	71	158	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +Liea e+ +l+rg+lk+++W+ev++++ +++ ++ +qCk++++ ++k+yk +k + + + s++p++++l+ PCP029440.1 71 CWSEEATAVLIEAWGERYLELSRGNLKQKHWKEVADVVssreDYGKIPKTDIQCKNRIDTVKKKYKLEKSKIGAG--GGPSKWPFYERLD 158 7***********************************8766667789999**************999997..67779****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MEEDDEILSP ASGGSRSPTS QRQNGRITVT VAVPPAQIPA PTPSQNKTLT LALPSSGKQQ 60 GRSSGGGRED CWSEEATAVL IEAWGERYLE LSRGNLKQKH WKEVADVVSS REDYGKIPKT 120 DIQCKNRIDT VKKKYKLEKS KIGAGGGPSK WPFYERLDHL IGPSGGAKVG PGSGGGGSGS 180 GEFSGHSQKM PVGVRHSQFL GHRAKREGKI RQKDLVEWDS DESRELSPFS IDNEVFERKR 240 RRTANANASV GKGVGGGLKP CAVGREKEGG GGGWGSSMRE LTRAILKFGE AYEHAETAKL 300 QQVVEMEKQR MKFAKELELQ RLQFFMKTQV EISQLKSGSG RKSGVNGGRE C

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MEEDDEILSP ASGGSRSPTS QRQNGRITVT VAVPPAQIPA PTPSQNKTLT LALPSSGKQQ  60
GRSSGGGRED CWSEEATAVL IEAWGERYLE LSRGNLKQKH WKEVADVVSS REDYGKIPKT  120
DIQCKNRIDT VKKKYKLEKS KIGAGGGPSK WPFYERLDHL IGPSGGAKVG PGSGGGGSGS  180
GEFSGHSQKM PVGVRHSQFL GHRAKREGKI RQKDLVEWDS DESRELSPFS IDNEVFERKR  240
RRTANANASV GKGVGGGLKP CAVGREKEGG GGGWGSSMRE LTRAILKFGE AYEHAETAKL  300
QQVVEMEKQR MKFAKELELQ RLQFFMKTQV EISQLKSGSG RKSGVNGGRE C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	238	242	RKRRR
2	238	243	RKRRRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	2e-52	Trihelix family protein