PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP029152.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 375aa MW: 41993.3 Da PI: 6.9273

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP029152.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.9	6e-32	18	116	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 aCaaC+++r++C++dC++apyf +++ ++f++vh++FG+sn++kllk+l++++ r +a++s ++eA+++ +dPv+G +g ++kl+++ e l++ l++ PCP029152.1 18 ACAACRHQRKRCEEDCAMAPYFTNKD-EDFKAVHRIFGVSNMTKLLKQLEDQNhRGAAVQSFIWEADMWNQDPVNGPLGKYRKLERENELLRNALNEE 114 7******************98776.99****************877769**********************************9999988 PP DUF260 98 ke 99 ++ PCP029152.1 115 QK 116 76 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MSMGSSSSAG ELVAGRHACA ACRHQRKRCE EDCAMAPYFT NKDEDFKAVH RIFGVSNMTK 60 LLKQLEDQNH RGAAVQSFIW EADMWNQDPV NGPLGKYRKL ERENELLRNA LNEEQKALAL 120 AASTMEEEPL ALGQENNNNS GNIADDVEGV IPIYGSSLNY GYAIQSLAID GFNNGAYTNL 180 LQGHEATEMS QGQQVLRQGR GFRHGVVSAK QEAPDQRRVV GLGSSSEQFG SVGLMSTPTF 240 QYQRPTQFEG PPNIGPHMNG QGRGQVVFDP SVGQEHQRAL GSVGAAQIGP NFGDFSLEAH 300 RRSTITQRHD DRYTPYHHRQ PQQQQQQRPV NAQRQVMNQR QNHHNFQRYS SLNNFHSYDN 360 VQDAELFNQV KSERP

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MSMGSSSSAG ELVAGRHACA ACRHQRKRCE EDCAMAPYFT NKDEDFKAVH RIFGVSNMTK  60
LLKQLEDQNH RGAAVQSFIW EADMWNQDPV NGPLGKYRKL ERENELLRNA LNEEQKALAL  120
AASTMEEEPL ALGQENNNNS GNIADDVEGV IPIYGSSLNY GYAIQSLAID GFNNGAYTNL  180
LQGHEATEMS QGQQVLRQGR GFRHGVVSAK QEAPDQRRVV GLGSSSEQFG SVGLMSTPTF  240
QYQRPTQFEG PPNIGPHMNG QGRGQVVFDP SVGQEHQRAL GSVGAAQIGP NFGDFSLEAH  300
RRSTITQRHD DRYTPYHHRQ PQQQQQQRPV NAQRQVMNQR QNHHNFQRYS SLNNFHSYDN  360
VQDAELFNQV KSERP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	6e-20	LBD family protein