PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP028887.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 441aa    MW: 49096.9 Da    PI: 8.0163
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP028887.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS278.52e-85554281374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl.....fsevsPilk 92 
                  l +lLl+cAe v++++  +a++l +    l+s++g+++qR++ yf +AL+++  r ++ ++++  ++++ + ++++e++aal+      f ev P+++
  PCP028887.1  55 LAHLLLACAEKVAKKQYGCAKKLQNLCDFLSSSSGNSVQRVVYYFSKALQQKTDReTGRNTSQGSESRDVAAMHVEEAMAALSPalmacFLEV-PFFQ 151
                  579*****************9998888999*************************66677777777777777777777776643545557775.**** PP

         GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                  ++ ++  qaI+e v++++++H +D+ i  G++ + L+qaLa+R e p  +l++T+vg    +s++++e tg+rLa+f e+l++pf f++ ++k+++d+
  PCP028887.1 152 VTEFAGIQAIVENVASSKKIHFVDLAIRTGGHCIVLMQALATRYECPIeMLKVTAVGV---KSRKKIEDTGRRLAQFSEALKLPFTFKIAMVKDIKDI 246
                  *******************************************9666559********...689*************************9******** PP

         GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                  +   +++++gEa+aV + l l ++++++ +les    ++k+++sl+P+++vv e ea+hns+ F +rf eal yysa f++l+a + r s  r+ +E+
  PCP028887.1 247 KEGIFELDTGEAVAVYCPLLLSSTMSQPNCLES----LMKALRSLNPRLMVVNEVEANHNSPIFINRFYEALFYYSAYFECLDACMDRGSALRMELEE 340
                  *******************99999988888888....************************************************************* PP

         GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   +l+ ei+n+va eg+er++r+ +   Wr+ ++++G+ +++ls +   qa+l+ ++++ ++  ++  + +++v gWk+ p++s+S+W+
  PCP028887.1 341 TYLSHEIKNIVASEGEERVNRRMKIDGWRSLFGKCGMVEAELSLSSLYQADLIAKQFAcGRSCTMGTNGKCFVVGWKGTPILSLSVWK 428
                  **********************************************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    
MSCASGLSTV EVMRVARERF IQFSSRRHAD DCMADHVLGS TAFGLSDQET KDVGLAHLLL  60
ACAEKVAKKQ YGCAKKLQNL CDFLSSSSGN SVQRVVYYFS KALQQKTDRE TGRNTSQGSE  120
SRDVAAMHVE EAMAALSPAL MACFLEVPFF QVTEFAGIQA IVENVASSKK IHFVDLAIRT  180
GGHCIVLMQA LATRYECPIE MLKVTAVGVK SRKKIEDTGR RLAQFSEALK LPFTFKIAMV  240
KDIKDIKEGI FELDTGEAVA VYCPLLLSST MSQPNCLESL MKALRSLNPR LMVVNEVEAN  300
HNSPIFINRF YEALFYYSAY FECLDACMDR GSALRMELEE TYLSHEIKNI VASEGEERVN  360
RRMKIDGWRS LFGKCGMVEA ELSLSSLYQA DLIAKQFACG RSCTMGTNGK CFVVGWKGTP  420
ILSLSVWKFH AVNVKTFKHL L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-56GRAS family protein