PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP028112.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

ARF

Protein Properties

Length: 1118aa MW: 123872 Da PI: 6.7941

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP028112.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.8	3.6e-22	136	237	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++++l PCP028112.1 136 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKQQL 230 99***************************9445444.38********************************************..5688889 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ PCP028112.1 231 LLGIRRA 237 **997 PP
2	Auxin_resp	116.5	2.3e-38	262	345	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW++S+Wr+L+ PCP028112.1 262 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAACgNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKHSQWRNLQ 345 79**************************9887766*******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1118 aa Download sequence
MKPPANGAGA SVANCASNSC SGGENVKSIN PELWQACAGP LVNLPPAGTH VVYFPQGHSE 60 QVAASMKKDV DGQIPNYPNL PSKLLCLLHN VTLHADPETD EVYAQMTLLP VSSFDKDALL 120 RSDLALKTNK PQPEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD 180 LHDTVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV LFIRDEKQQL LLGIRRANRQ 240 PTNLSSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKAACGNQ 300 LSLGMRFRMM FETEESGTRR YMGTITGISD LDPVRWKHSQ WRNLQVGWDE STAGERRNRV 360 SIWEIEPVTA PFFICPPPFF RSKRPRQPGM PDEDYDMDNL FKRTMPWLGD DMSMKDPQVL 420 PGLNLVQWMN MQQNSSTGNF MQPNYVHSYS GSAMENLAGA DLSRQLGLST PQIPQMNNLQ 480 FNGQRPPQQV QQLDQLPKQP SSSSPLASMI QRQQQLGDNS QPPRQNSVNQ TLPLSQVQSQ 540 LLQPQTLAQN NSGVLQQQSS AQNHLQRNIP QNLQQHQQQQ QQHQQQIMGQ NQQQSFIQSQ 600 PPDQMNQQLQ HLSDNQLQFQ LLQKLQQQQQ SLLAQQALQH PAQHVQLQDQ QRQMFDMSQS 660 FSRSSPTQML DMPQMAPTSH PQSRTMPQQM TKNSHSQANV RFSQPPQQPK LQQQQSGMLP 720 EMSGHMGLPN TTTNQLSTVG SNMMTAVAGA GQSGITDEVP SCSTSPSTNN GLSVIQPLMN 780 NRSHRNSSIG EDIAQSATTI LSSSAIDRMP SHGNLMKDFQ HKSEVKPSVN IARNQSQGIL 840 APQAYMNGAA SQTDYLDTSS STTSVGLSQN DVHLQQNNAP LPFHPQSMLF REASQEVEVL 900 VDQRNNVPYG SNIDGQIGIP LNPDPMLAKG VVGLAKDFSN TLSSGGMLGN YENSKDAQVE 960 LSTSMVSQSF GVPDMTFNSI DSAINDSSFL DSGPWPPAPP FQRMRTYTKV YKRGAVGRSI 1020 DMTRYSNYDE LKQDLARRFG IEGQLEDRGR VGWKLVYVDH ENDVLLVGDD PWEEFVNCVR 1080 CIKILSPQEV QQMSLDGDFG GNAVLPNQAC SSSDGGNA

Sequence ? help Back to Top

Protein Sequence Length: 1118 aa Download sequence

MKPPANGAGA SVANCASNSC SGGENVKSIN PELWQACAGP LVNLPPAGTH VVYFPQGHSE  60
QVAASMKKDV DGQIPNYPNL PSKLLCLLHN VTLHADPETD EVYAQMTLLP VSSFDKDALL  120
RSDLALKTNK PQPEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD  180
LHDTVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV LFIRDEKQQL LLGIRRANRQ  240
PTNLSSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKAACGNQ  300
LSLGMRFRMM FETEESGTRR YMGTITGISD LDPVRWKHSQ WRNLQVGWDE STAGERRNRV  360
SIWEIEPVTA PFFICPPPFF RSKRPRQPGM PDEDYDMDNL FKRTMPWLGD DMSMKDPQVL  420
PGLNLVQWMN MQQNSSTGNF MQPNYVHSYS GSAMENLAGA DLSRQLGLST PQIPQMNNLQ  480
FNGQRPPQQV QQLDQLPKQP SSSSPLASMI QRQQQLGDNS QPPRQNSVNQ TLPLSQVQSQ  540
LLQPQTLAQN NSGVLQQQSS AQNHLQRNIP QNLQQHQQQQ QQHQQQIMGQ NQQQSFIQSQ  600
PPDQMNQQLQ HLSDNQLQFQ LLQKLQQQQQ SLLAQQALQH PAQHVQLQDQ QRQMFDMSQS  660
FSRSSPTQML DMPQMAPTSH PQSRTMPQQM TKNSHSQANV RFSQPPQQPK LQQQQSGMLP  720
EMSGHMGLPN TTTNQLSTVG SNMMTAVAGA GQSGITDEVP SCSTSPSTNN GLSVIQPLMN  780
NRSHRNSSIG EDIAQSATTI LSSSAIDRMP SHGNLMKDFQ HKSEVKPSVN IARNQSQGIL  840
APQAYMNGAA SQTDYLDTSS STTSVGLSQN DVHLQQNNAP LPFHPQSMLF REASQEVEVL  900
VDQRNNVPYG SNIDGQIGIP LNPDPMLAKG VVGLAKDFSN TLSSGGMLGN YENSKDAQVE  960
LSTSMVSQSF GVPDMTFNSI DSAINDSSFL DSGPWPPAPP FQRMRTYTKV YKRGAVGRSI  1020
DMTRYSNYDE LKQDLARRFG IEGQLEDRGR VGWKLVYVDH ENDVLLVGDD PWEEFVNCVR  1080
CIKILSPQEV QQMSLDGDFG GNAVLPNQAC SSSDGGNA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein