PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP028067.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 427aa    MW: 47962.2 Da    PI: 5.1428
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP028067.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS71.21.9e-22661653102
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lL+ecA+avs++d +++++lL+ l+elasp+gd  q+la+yf++AL  + ++s+ ++yk+l++ ++++++ +++ +    f+e+sP+ +f+h++ N+
  PCP028067.1  66 RLLMECARAVSEKDSSKISHLLWMLNELASPYGDFEQKLASYFLQALFCKATDSGLRCYKTLSSVAEKSHSFDSARKLILKFQELSPWTTFGHVASNE 163
                  79************************************************************9999985554444445445***************** PP

         GRAS 101 aI 102
                  a+
  PCP028067.1 164 AL 165
                  97 PP
2GRAS160.71.3e-49163423130374
         GRAS 130 qaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserde 226
                  +aLa+R++++p+l++T+v+  +s  k  ++e+g+r++kfA+ +gvpfe++v+   ++l +l+ e+L v+++Ea+aVn++ +l r+      +e+ r +
  PCP028067.1 163 EALATRNDETPHLKLTVVVT-ASIVKSLMKEIGQRMEKFARLMGVPFEIKVIsGLNNLGQLTKEDLGVQEDEAIAVNCIGALRRVE-----VEE-RGA 253
                  59******************.5579999***********************95567****************************97.....444.88* PP

         GRAS 227 vLklvkslsPkvvvvveqeadh.nse...sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr........erhetl 312
                  v+++++sl+P+vv+vve+ead+ +s+   +F++ f e+l++y+  fd+le+++ ++s++r ++Ere++ r+i  v+ c + ++         er+e+ 
  PCP028067.1 254 VIRMFQSLRPRVVTVVEEEADLfSSSvndDFVKYFEECLRFYTLYFDMLEESFVPTSNDRLMLERECM-RSIIRVLGCDHHDHDddknggeyERRERG 350
                  ********************9965557779************************************65.7899999999877643333444489**** PP

         GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve..........ee...sgslvlgWkdrpLvsvSaWr 374
                  ++W++rl++a F+pv +s+++++++k+ll+++   g+ +           ee   +  l+l+Wk++p v++S W+
  PCP028067.1 351 NQWSDRLKAA-FSPVGFSDDVVDDVKALLKRYR-AGWALVlspqggggggEEdidQTGLYLTWKEEPAVWASIWK 423
                  *******865.**********************.55565533555555551167799999**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    
MDISLFSPNK EANFLQQYSN QIKINGLAAA IDMQSTNQQT QNSHTSTSRS SGSSEPCPAG  60
TKWASRLLME CARAVSEKDS SKISHLLWML NELASPYGDF EQKLASYFLQ ALFCKATDSG  120
LRCYKTLSSV AEKSHSFDSA RKLILKFQEL SPWTTFGHVA SNEALATRND ETPHLKLTVV  180
VTASIVKSLM KEIGQRMEKF ARLMGVPFEI KVISGLNNLG QLTKEDLGVQ EDEAIAVNCI  240
GALRRVEVEE RGAVIRMFQS LRPRVVTVVE EEADLFSSSV NDDFVKYFEE CLRFYTLYFD  300
MLEESFVPTS NDRLMLEREC MRSIIRVLGC DHHDHDDDKN GGEYERRERG NQWSDRLKAA  360
FSPVGFSDDV VDDVKALLKR YRAGWALVLS PQGGGGGGEE DIDQTGLYLT WKEEPAVWAS  420
IWKPSAN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-114GRAS family protein