PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP027761.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 352aa MW: 38656.9 Da PI: 10.2369

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP027761.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.4	1.2e-15	51	134	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea++ ++ +r+klk+++We+v++++ + ++ ++++qCk+k+e+++kry+ + ++ + s++p++ +l+ PCP027761.1 51 EWSEGAVASLLEAYETKWVLRNRAKLKGHDWEDVARHVssraSCTKSPKTQTQCKNKIESMKKRYRSESATGDG------SSWPLYPRLD 134 5***********************************85555555566778*************9998886......4699999886 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MDGETNQENP SLPPNNHTTT TTKELESPPR SKPPQQPPLG GSGGDRLKRD EWSEGAVASL 60 LEAYETKWVL RNRAKLKGHD WEDVARHVSS RASCTKSPKT QTQCKNKIES MKKRYRSESA 120 TGDGSSWPLY PRLDLLLRGS GTSPTAAAAA AAAVAATVPP PPLPPLQLLH PLPQNNHPLM 180 LLEPSAPPPL PPPPPPPAPP PLMGTAQNSF GSNGADHRVA KEDAVGMKLS DHASDKNPLE 240 VDSSTPALYS DKEKLRSKRM KRKMEKKKRR RREEVDVAES IRWLAEVVVR SEQARMDSMR 300 EIERMRVEAE AKRGEMDLKR TEIIANTQLE IARLFAAGGG KGVDSSLRIG RS

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MDGETNQENP SLPPNNHTTT TTKELESPPR SKPPQQPPLG GSGGDRLKRD EWSEGAVASL  60
LEAYETKWVL RNRAKLKGHD WEDVARHVSS RASCTKSPKT QTQCKNKIES MKKRYRSESA  120
TGDGSSWPLY PRLDLLLRGS GTSPTAAAAA AAAVAATVPP PPLPPLQLLH PLPQNNHPLM  180
LLEPSAPPPL PPPPPPPAPP PLMGTAQNSF GSNGADHRVA KEDAVGMKLS DHASDKNPLE  240
VDSSTPALYS DKEKLRSKRM KRKMEKKKRR RREEVDVAES IRWLAEVVVR SEQARMDSMR  300
EIERMRVEAE AKRGEMDLKR TEIIANTQLE IARLFAAGGG KGVDSSLRIG RS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	266	271	KKKRRR
2	266	272	KKKRRRR
3	267	272	KKKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	2e-58	Trihelix family protein