PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP027729.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 274aa    MW: 31407.6 Da    PI: 7.5564
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP027729.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.21.3e-1929116286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  Wt++e+ +Li+a++e++ +lrrg+lk  +Weev+  +      + +  ++s++qC++k+e+l++r++ +k++ ++rt   +s +p+f+ +e
  PCP027729.1  29 WTHEETVQLIRAYQEKWYALRRGQLKSSQWEEVAVTVaarcgyEYGEPSKSSTQCRHKMEKLRQRHRGVKKRLGQRT---KSGWPFFELME 116
                  ***********************************998777766666689************************984...457*****998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MSTLPPPSPT ASVSASPTPS AKKPQPLPWT HEETVQLIRA YQEKWYALRR GQLKSSQWEE  60
VAVTVAARCG YEYGEPSKSS TQCRHKMEKL RQRHRGVKKR LGQRTKSGWP FFELMEQMER  120
GPMPISAMPM GEMPHQQEEE ERDYHGGGDD EDDEENSNRV RSIDYILRRP TFVNRFSGKD  180
PFLQGPAALK RGREAVDDGD VVEPAQQKGR EMVVELADEM RAFAQQLIGV ENTRMEMMKE  240
TERCRVEMEK KRMSMILQSQ QKIVDSINTA FGSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.11e-50Trihelix family protein