PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP027469.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 418aa MW: 44942.4 Da PI: 5.66

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP027469.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.9	3.7e-13	133	183	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r++h +Er+RR+++N+ + Lr+l+P + k+ + a+i +v+YI++Lq PCP027469.1 133 RMSHITVERNRRKQMNDHLTVLRSLMPCF---YVKRGDQASIIGGVVDYINELQ 183 99************************9...9******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MAMEDHDRSS DFLEEHEQYY YSDNNCNLGI PGDDLFSILQ SLDDHGFGGG GGGGGGGVVD 60 FPSPLATAPF DDDQLLSVFS SSPKDLSSSA DQTEFDETNS PPKTKRLKLS SAATPTATAT 120 TTTTNSSDQD GGRMSHITVE RNRRKQMNDH LTVLRSLMPC FYVKRGDQAS IIGGVVDYIN 180 ELQQVLQSLE AKKQRKAYSC ELLSSPRLQQ VSSPRPPGPS PPVLSPRKPP LSPRLGGSSL 240 PPISPRTPQP TSPYKPTAAW TILQQPQILP AAANIISNYL ISNPTMAASS SLEPSPTSSS 300 ATSSINNSVD NLNELFANSK SAIADVEVKF SGPNVLLKTV SPRIPGQALK IISALEDLSL 360 EILHVSVTTV DETMLNSFTI KLAANDWYVL SCFLARLELN ANLVPRNSLT KSSKHSAN

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MAMEDHDRSS DFLEEHEQYY YSDNNCNLGI PGDDLFSILQ SLDDHGFGGG GGGGGGGVVD  60
FPSPLATAPF DDDQLLSVFS SSPKDLSSSA DQTEFDETNS PPKTKRLKLS SAATPTATAT  120
TTTTNSSDQD GGRMSHITVE RNRRKQMNDH LTVLRSLMPC FYVKRGDQAS IIGGVVDYIN  180
ELQQVLQSLE AKKQRKAYSC ELLSSPRLQQ VSSPRPPGPS PPVLSPRKPP LSPRLGGSSL  240
PPISPRTPQP TSPYKPTAAW TILQQPQILP AAANIISNYL ISNPTMAASS SLEPSPTSSS  300
ATSSINNSVD NLNELFANSK SAIADVEVKF SGPNVLLKTV SPRIPGQALK IISALEDLSL  360
EILHVSVTTV DETMLNSFTI KLAANDWYVL SCFLARLELN ANLVPRNSLT KSSKHSAN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	144	RMSHITVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53210.1	5e-80	bHLH family protein