PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP027098.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 533aa    MW: 59762.8 Da    PI: 4.4705
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP027098.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.32.5e-22251643127
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya..tgk....rknra.........tk...sgy 82 
                  pGf F+Ptde l+ +yLk+k+eg++ ++ ++++e+d+ k+eP d+p+ ++ +  +   F+++++k    +g+                  t    +++
  PCP027098.1  25 PGFGFSPTDELLIRYYLKNKIEGTDSHFRRIFPEIDLSKYEPGDIPE-LNWTGFDFLRFVHSSQKLMrmSGSsspaP---NtrtaaalaaTGsriKAF 118
                  9***************************999***************4.33333344334444444331222222221...022234455522455789 PP

          NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                   k tg ++e+ ++ ++ ++g k +L+f++gr pk++k+dWv+hey 
  PCP027098.1 119 NKITGDEREIRAEeSKDVIGKKIILTFHEGRGPKAKKSDWVIHEYY 164
                  99********9985566699999**********************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    
MGSSSSSSIA PEEGDAVRVN VSRLPGFGFS PTDELLIRYY LKNKIEGTDS HFRRIFPEID  60
LSKYEPGDIP ELNWTGFDFL RFVHSSQKLM RMSGSSSPAP NTRTAAALAA TGSRIKAFNK  120
ITGDEREIRA EESKDVIGKK IILTFHEGRG PKAKKSDWVI HEYYCTKTEV GSKPTKQMDF  180
VLCRLKNRSS SYKKPKGDPT RGELPDSDAN SEDDQAAGGD VIPGPVEHLG YKELGDFNNS  240
ESPDGSCLID CINILSFDDG DDETGDGKFP DLDDPAASAR FLELRAEMEE ILNSPPQTPH  300
QTPQDYLSST FLSSGNIQLG AVLQANGTSD DCNTIQSPFG DNNYSYTDKN DISTCDEGEP  360
HRFTVSDFEN KVVHDMSQEL CVQPQKDMDL LQLHVAQQSP TYTKLEDFMD ANIFYDECIE  420
WQPQIGDEYS HVNCKNNIST NDKNEPVSCN AFDLENQYTD NMILEPCVQP EKYLRSVLHA  480
DICDNGYNNW QPTCWDKDSY LTDKKNISTN DKDKQYSSIA SNFDNQATNK RKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.23e-22NAC family protein