PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP026232.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family SRS
Protein Properties Length: 490aa    MW: 53243.9 Da    PI: 7.3667
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP026232.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702209.96.3e-652494114154
       DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrel..........kskkqsal 86 
                  g+asCqdCGnqakkdC h+RCRtCCk rg++C thvkstWvpa+krrerqqqlaa+++++ +++     +  + +++++l            ++ s+ 
  PCP026232.1 249 GSASCQDCGNQAKKDCIHMRCRTCCKDRGLHCPTHVKSTWVPASKRRERQQQLAALQHQHHQQQghiqqH--HDQQQQQLqvirgesskrLRENPSSN 344
                  7899***************************************************999988887666421..22222222444444444333333444 PP

       DUF702  87 sstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     ++ ++++++ l++ ++P+evss+avfrc++vs++d+ e+++aYqtav+i+Gh+fkGiLydqG+e+
  PCP026232.1 345 PPLRILTNTNTSGLDVVNFPPEVSSPAVFRCMKVSAMDN-EDQYAYQTAVNIAGHLFKGILYDQGPES 411
                  444555555555666666*******************97.579**********************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    
MAGFFSLGRG GSDDQDNSNN PPPPDHHNHH QIAPETLFWY KNEDVANQPY KGFEPWQQQE  60
QLLQLQTQPP PRLYQPHPHH HQDLYTSAAA LGVGPSSRGS DDTSSSRSAT AGFTMMRSSS  120
GGRGGSGGGA SCQDCGNQAX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXQTQP PPRLYQPHPH HHQDLYTSAA ALGVGPSSRG SDDTSSSRSA TAGFTMMRSS  240
SGGRGGSGGS ASCQDCGNQA KKDCIHMRCR TCCKDRGLHC PTHVKSTWVP ASKRRERQQQ  300
LAALQHQHHQ QQGHIQQHHD QQQQQLQVIR GESSKRLREN PSSNPPLRIL TNTNTSGLDV  360
VNFPPEVSSP AVFRCMKVSA MDNEDQYAYQ TAVNIAGHLF KGILYDQGPE SPNYNMNMAA  420
DTSSGGGVNF QPLNLIAGAA SAVNTASIDG GGGHEGVEVA GSTTVIDPSS LYPAPINTYM  480
GTQFFLPPRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121129GGRGGSGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.13e-63SRS family protein