PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP026141.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 313aa MW: 35746.4 Da PI: 4.4901

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP026141.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.3	1.5e-19	71	125	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++t++q++ Le+ Fe+++++ e++ +LA++lgL+ rqV +WFqNrRa++k+ PCP026141.1 71 KKRRLTANQVQFLEKKFESENKLEPERKVQLANELGLQPRQVAIWFQNRRARYKN 125 56689************************************************95 PP
2	HD-ZIP_I/II	128.5	2.7e-41	71	162	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrl+++qv++LE++Fe+e+kLeperKv+la+eLglqprqva+WFqnrRAR+k+kqlEkdy++Lk++yd+l+ + ++L ke+ +Lr+e+++ PCP026141.1 71 KKRRLTANQVQFLEKKFESENKLEPERKVQLANELGLQPRQVAIWFQNRRARYKNKQLEKDYDSLKASYDKLNVDVDNLLKENGSLRNEVDS 162 9**************************************************************************************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence
MKVIFRNEKR PRSSDVLESL WIPTPSSSFH GSMVNFENVS EGDCLDRPFF QPKQENEDED 60 YYGSYLHQPG KKRRLTANQV QFLEKKFESE NKLEPERKVQ LANELGLQPR QVAIWFQNRR 120 ARYKNKQLEK DYDSLKASYD KLNVDVDNLL KENGSLRNEV DSLKDILLSR EKGKPDGGNS 180 DSHNAIDSSD LVTRSAIPNE DSETVTKGAM VVCKQEDASS AKSDIFDSDS PHCTENHSPL 240 LEPADSSHVF EPADQSDFSQ EEDDDLGKTL LPPPQPYLLK LEDCCYDNLP PPNSSNFGYI 300 PLEDQQPFCF WPY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	127	RRARYKNKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	2e-41	HD-ZIP family protein