PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP026028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | LBD | ||||||||
Protein Properties | Length: 234aa MW: 26393.8 Da PI: 9.1953 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 114.8 | 5.6e-36 | 16 | 114 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++r+kC ++C+lapyfpa+++++f +vhk+FG+snv+k++k+++e +r+++++slv+eA +r++dPv Ga+g ++ ++ +l++ k++ ++ + PCP026028.1 16 ACAACKHQRKKCHAGCILAPYFPADRTREFLAVHKVFGVSNVTKMVKNVEEPNRRKVAESLVWEALCRQKDPVLGAYGEYRMVSDELKRYKQQQNREN 113 7******************************************************************************************9988766 PP DUF260 99 e 99 + PCP026028.1 114 H 114 5 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence |
MQRTNNNGTA GSTQPACAAC KHQRKKCHAG CILAPYFPAD RTREFLAVHK VFGVSNVTKM 60 VKNVEEPNRR KVAESLVWEA LCRQKDPVLG AYGEYRMVSD ELKRYKQQQN RENHTVPLQV 120 QKGLCFNKSL SDLVGNWNGG ITNGITNVNN SGYLRDNDDV IPDSAPFGYP LNCEQQSHQK 180 VAKQVKMVDS VVVPIHQQQQ HYSVNNINQR YYLTGQFNEI IGKRIEGTIW EGGS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 2e-43 | LBD family protein |