PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP025987.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 502aa MW: 56148.4 Da PI: 7.6989

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP025987.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0016	428	450	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C k+F++ L H r+H PCP025987.1 428 HECPFCFKVFKSGQALGGHKRSH 450 78******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MKENPTMEEE DRNDQNQKNK FVCRENPKKT WRFSDAGPTF QLQQEKVCKE CGKGFQSLKA 60 LCGHMACHSE KEKLMNKFEE ISEFSEKQKL LDVMDSQSDT ETSAPPRQRR ISKRLKQQNL 120 DVYSSVANGG SSSGGSGIEQ EQQEVALSLM MLSRDSGGKG GLNSFAESSD NNSVILEAKS 180 SSIDTRINTK EGLYCTYKVS DVMGMKRVRE KKLKSEEIEV SDNSDSGYFR HEQPKKVDSD 240 VSVDGFFRNG EFHKGRAEFG SRIVGYESYD VKIRKGFRVE SELGKDVSNA EARSPDQVHR 300 DRGTMKYTLR KTTKNATFHR PIVDDSSNVE PCRNARKSGK YECLTCNKTF HSHRALGGHR 360 ASHTKTNAYS ESMYESGENS IDTDPSPVPT PESSKLADQH CSGKKPMNDQ DFSGSAKRSS 420 GTKKSKGHEC PFCFKVFKSG QALGGHKRSH FVGGCEVKTV VLGQQEPDQP PPHEAEITAL 480 FDLNLPAPME DEANDHFGYM AW

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MKENPTMEEE DRNDQNQKNK FVCRENPKKT WRFSDAGPTF QLQQEKVCKE CGKGFQSLKA  60
LCGHMACHSE KEKLMNKFEE ISEFSEKQKL LDVMDSQSDT ETSAPPRQRR ISKRLKQQNL  120
DVYSSVANGG SSSGGSGIEQ EQQEVALSLM MLSRDSGGKG GLNSFAESSD NNSVILEAKS  180
SSIDTRINTK EGLYCTYKVS DVMGMKRVRE KKLKSEEIEV SDNSDSGYFR HEQPKKVDSD  240
VSVDGFFRNG EFHKGRAEFG SRIVGYESYD VKIRKGFRVE SELGKDVSNA EARSPDQVHR  300
DRGTMKYTLR KTTKNATFHR PIVDDSSNVE PCRNARKSGK YECLTCNKTF HSHRALGGHR  360
ASHTKTNAYS ESMYESGENS IDTDPSPVPT PESSKLADQH CSGKKPMNDQ DFSGSAKRSS  420
GTKKSKGHEC PFCFKVFKSG QALGGHKRSH FVGGCEVKTV VLGQQEPDQP PPHEAEITAL  480
FDLNLPAPME DEANDHFGYM AW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	7e-74	C2H2 family protein