PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP024843.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 252aa    MW: 28287 Da    PI: 9.4692
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP024843.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.84e-302171151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k+ien s rqvtfskRrng+lKKA+ELSvLCdaevavi+fsstgklye+ss
  PCP024843.1 21 KKIENLSSRQVTFSKRRNGLLKKAKELSVLCDAEVAVIVFSSTGKLYEFSS 71
                 68***********************************************96 PP
2K-box46.22e-161021821292
        K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                   +a +++ +l+ L++ei +L+ +  ++ G++L+  slk+Lq+Le+qL +++  +++kK+e+l+e++++++ + +e++++++
  PCP024843.1 102 MQATNSNCNLNALQNEIATLRLTCTRMTGKELDGVSLKDLQRLEDQLSEGILCVKDKKEEILMEKLQKSRLQLEEMRQNKR 182
                  56678888999**********999**********************************************99999998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MNTENSTPAR KPLGRGRIEI KKIENLSSRQ VTFSKRRNGL LKKAKELSVL CDAEVAVIVF  60
SSTGKLYEFS STSMDHTLSR YNKGGLIEHP QKERSGDNEP VMQATNSNCN LNALQNEIAT  120
LRLTCTRMTG KELDGVSLKD LQRLEDQLSE GILCVKDKKE EILMEKLQKS RLQLEEMRQN  180
KRSNWPIVVA SHPLERRFSC TSSKAVSSYK AEESDHSDTS LHLGLSSDVH RKRKAAKIEH  240
NSNDSGSQVA SD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.13e-61MIKC_MADS family protein