PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP024487.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 446aa MW: 51027.3 Da PI: 6.4061

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP024487.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.1	7.4e-21	119	215	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 rWt++ v++ i+++ ++++ + + +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++++ +++ +++++++ ++ d + PCP024487.1 119 RWTDNVVRLVIDVVACVGDDGSVEGseglkrksgilQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCRVVENPALMDAM 215 8************777777743224566677888********************************************569999998888877 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MDGSELGGGF LSGPSGGILD LESPVPRRQE MQLGHQLLGH QHHMNVMGGV AGDRHPIGLV 60 EVKGSIPKVG SIIGKGKAVA SFNANNGYNL SDEDEQNYTD DESIEGAKGK KGCPWQRMRW 120 TDNVVRLVID VVACVGDDGS VEGSEGLKRK SGILQKKGKW KTVSKIMISK GCHVSPQQCE 180 DKFNDLNKRY KRLNDILGRG TSCRVVENPA LMDAMPHLSA KVKDDVRKIL SSKHLFYKEM 240 CAYHNGQRIP DCQDLDPHGY SLPLGRCSKD NNGSAEEEAE ENHDSEDDEL DNEDDNEADN 300 DRERMRRMGE RKRVREEDGH LWPQYVLLDS FQVEMGEIFQ DPTKSLWERR DWIKKQKQQL 360 QEQRVSFQAE ALEIEKQRYK WLRYCSKKDR ELERLRLENE RMKLENERRV LQLRQKELEI 420 DLRRSEASLE PSSLGLGRDH IDLGRH

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MDGSELGGGF LSGPSGGILD LESPVPRRQE MQLGHQLLGH QHHMNVMGGV AGDRHPIGLV  60
EVKGSIPKVG SIIGKGKAVA SFNANNGYNL SDEDEQNYTD DESIEGAKGK KGCPWQRMRW  120
TDNVVRLVID VVACVGDDGS VEGSEGLKRK SGILQKKGKW KTVSKIMISK GCHVSPQQCE  180
DKFNDLNKRY KRLNDILGRG TSCRVVENPA LMDAMPHLSA KVKDDVRKIL SSKHLFYKEM  240
CAYHNGQRIP DCQDLDPHGY SLPLGRCSKD NNGSAEEEAE ENHDSEDDEL DNEDDNEADN  300
DRERMRRMGE RKRVREEDGH LWPQYVLLDS FQVEMGEIFQ DPTKSLWERR DWIKKQKQQL  360
QEQRVSFQAE ALEIEKQRYK WLRYCSKKDR ELERLRLENE RMKLENERRV LQLRQKELEI  420
DLRRSEASLE PSSLGLGRDH IDLGRH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	6e-63	Trihelix family protein