PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP024420.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

GeBP

Protein Properties

Length: 487aa MW: 55185.8 Da PI: 4.851

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP024420.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	79.6	4.7e-25	111	212	4	97
DUF573 4 qrlwseeDeivlLqGlidfkaktgk....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifelsk 93 +r+w +eDe+ lL+G++d ++ + ++++ +y+ +k +++++ +k+ +veK+rrLK+K+++ vkk +sgke++f+++hd+ +fels+ PCP024420.1 111 KRVWCKEDELELLRGFLDHYGTRQTkitrTTAKETTSLYDEIKPRLKLECNKTKMVEKLRRLKRKYHNVVKKmneiNSSGKEFRFKNAHDNAVFELSH 208 89**************854444434655667*********************************998887789*************** PP DUF573 94 kiWg 97 iW+ PCP024420.1 209 TIWN 212 *7 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MSSSSSSYSS SEYESDSEDD LHHRDPGNNN VQQAQKGHNV NDHDNEDDDN DVSYEPHEDE 60 EEDEEKVEEP KSSSTSDYSF TIYEPRLKRR RIDHANEALT SLQEVKKRRG KRVWCKEDEL 120 ELLRGFLDHY GTRQTKITRT TAKETTSLYD EIKPRLKLEC NKTKMVEKLR RLKRKYHNVV 180 KKMNEINSSG KEFRFKNAHD NAVFELSHTI WNVDNRNNCV VESHNNNVMV KREEDNVAAS 240 SSVADHERPT TWFDENNNVT NADDNINTGH DVRRLIVGLA MNPMPLSLKG KMGSGGGGGS 300 GGVGEVVEDE KWRQQQILEL EAYEKRLDLV QHQEDKNSID VSKEDKPTSD EPTSPPPASS 360 VDPPEPVPEE LETTFDKRRL EEKFAVLNTG VYECRSCGYK YDEAVGDPSY PVPPGLPFDK 420 LPEDWRCPTC GAAQGFFVSK SVEIAGFAQN QQFGLGGNTL TSGQKAVLIF GGLFLFFVLF 480 LSGYFLQ

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MSSSSSSYSS SEYESDSEDD LHHRDPGNNN VQQAQKGHNV NDHDNEDDDN DVSYEPHEDE  60
EEDEEKVEEP KSSSTSDYSF TIYEPRLKRR RIDHANEALT SLQEVKKRRG KRVWCKEDEL  120
ELLRGFLDHY GTRQTKITRT TAKETTSLYD EIKPRLKLEC NKTKMVEKLR RLKRKYHNVV  180
KKMNEINSSG KEFRFKNAHD NAVFELSHTI WNVDNRNNCV VESHNNNVMV KREEDNVAAS  240
SSVADHERPT TWFDENNNVT NADDNINTGH DVRRLIVGLA MNPMPLSLKG KMGSGGGGGS  300
GGVGEVVEDE KWRQQQILEL EAYEKRLDLV QHQEDKNSID VSKEDKPTSD EPTSPPPASS  360
VDPPEPVPEE LETTFDKRRL EEKFAVLNTG VYECRSCGYK YDEAVGDPSY PVPPGLPFDK  420
LPEDWRCPTC GAAQGFFVSK SVEIAGFAQN QQFGLGGNTL TSGQKAVLIF GGLFLFFVLF  480
LSGYFLQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	92	KRRRI
2	88	109	KRRRIDHANEALTSLQEVKKRR
3	88	111	KRRRIDHANEALTSLQEVKKRRGK
4	89	110	KRRRIDHANEALTSLQEVKKRR
5	106	111	KKRRGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	3e-24	GeBP family protein