PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP023849.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 555aa    MW: 60666.2 Da    PI: 8.306
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP023849.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.7e-07135154626
                  -SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                  C++f++ G+Ck Gd C FaHg
  PCP023849.1 135 CPDFRK-GHCKKGDACEFAHG 154
                  9*****.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    
MTLGELHRPN PTVHVPPSLP HDDSTADMYS PSPLSGNANG ADFNSPYYLH EALTTLQCYL  60
PSNETDLDSD SDISGRESDA PIDAYSCDHV RMFEFKVRRC ARGPSHDWTE CPYAHPGEKA  120
RRRDPRKYHY SGTGCPDFRK GHCKKGDACE FAHGVFEYWL HPSRYRTQPC KDGTSCKRRV  180
CFFAHTPEQL RVLPQQSPRG GGNSLNEAES YDGSPLRQAM EAAAASCVKT MPFVSSRPEE  240
SPPVSPMSGP LGLGSINEMV ASRRNLQFGK VKSFSSSRNV RAGGSSGFGS PVSPGFGSPC  300
GSMVRPEFSS LPSTPTRVPS RSGISYLVTS SEWILLLTSC GIETLASAFD QVSSPLNPRY  360
ALIGMLLAIV AVLVCICELL QNAIKERVVL RRRGMLWCFH YPPPNNMLFG TFPEIFGLVL  420
AIVQCICSAV QYHFSRRHAT SPIKLSPLPV VFAFSLVVSK LVQSRRCTAD DTLQNGTIFT  480
DGVSQLAKGS NFVPFKSCSV AGCLRSQPPC LVVSIVTGAV DRVPLLWVRY SGGGLELDLS  540
LEAADKLRRD KLVAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.13e-95C3H family protein