PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP023537.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

TCP

Protein Properties

Length: 402aa MW: 43057.6 Da PI: 7.346

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP023537.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.5	2.8e-39	64	180	2	112
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 ++k+++ +++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++ + s +ss+s+ s++ PCP023537.1 64 PAKRTSAKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSSMSAPshylrtnasn 161 6899*****************************************************************99986777777777444445556433333 PP TCP 89 ....kaaksaakskksqksaasalnlak 112 + ++ aas+++l PCP023537.1 162 yyfnS---------NNFGAAASTSQLVT 180 33330.........33333333333333 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MIMEADNGIR CRPNFPLQFI DKTNQVDDDP EPVAACSTVA DPGSDPNRTG SSIQEQQPSN 60 KKPPAKRTSA KDRHTKVDGR GRRIRMPATC AARVFQLTRE LGHKSDGETI EWLLQQAEPS 120 VIAATGTGTI PANFTSLNIS LRSSGSSMSA PSHYLRTNAS NYYFNSNNFG AAASTSQLVT 180 EENAQRGRIL FPGAGLMSSE NSPPSSMLWN FNHSGNNNVS NNTMLEAKQE LGDHHQAVTL 240 DEASSMARKR IRPEQDLLSA STGPIPASQN TTPATFWMVA NNNLSNSQGS IHHEHTNSIN 300 PMWTIPTIGN AGNMYRGPVA GGSHGLHFMN FASPMAILPG QQLGLGSSTT SHGAADSHLG 360 VLAALNAYRP ILGGVAMEST ANGQHHPHHG ADEGHDRNTN AR

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MIMEADNGIR CRPNFPLQFI DKTNQVDDDP EPVAACSTVA DPGSDPNRTG SSIQEQQPSN  60
KKPPAKRTSA KDRHTKVDGR GRRIRMPATC AARVFQLTRE LGHKSDGETI EWLLQQAEPS  120
VIAATGTGTI PANFTSLNIS LRSSGSSMSA PSHYLRTNAS NYYFNSNNFG AAASTSQLVT  180
EENAQRGRIL FPGAGLMSSE NSPPSSMLWN FNHSGNNNVS NNTMLEAKQE LGDHHQAVTL  240
DEASSMARKR IRPEQDLLSA STGPIPASQN TTPATFWMVA NNNLSNSQGS IHHEHTNSIN  300
PMWTIPTIGN AGNMYRGPVA GGSHGLHFMN FASPMAILPG QQLGLGSSTT SHGAADSHLG  360
VLAALNAYRP ILGGVAMEST ANGQHHPHHG ADEGHDRNTN AR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	2e-49	TCP family protein