PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP023344.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 532aa    MW: 59247.4 Da    PI: 6.0655
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP023344.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS375.75.8e-1151605311374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykalppsetsekn..sseelaalklfsevsPilkfsh 95 
                  lv+lL++cAeav+ +d++ a+alL +l+ +a   g+++qR+a++f+++La+rla  ++ + ++ +  s+ s+k+   +++  al+l +e++P ++f+h
  PCP023344.1 160 LVQLLIACAEAVACRDKSHASALLYELRANALVFGSSFQRVASCFVQGLANRLALVQPlGAVRFI-GSAMSTKDfaLDKKEEALRLVYEICPHIQFGH 256
                  689***************************************************95541344444.3333333445999999**************** PP

         GRAS  96 ltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                  ++aN+ Ilea+ege+ vH++D++++    +G QW  L+++La+R+++pp +lRiTgvg       ++l+ +ge L+ +A++lg+++ef+v v+++le+
  PCP023344.1 257 FVANSSILEAFEGESFVHVVDLGMTlglpHGDQWRGLIESLATRTDQPPtRLRITGVGL----YGDRLQIIGEELEAYADSLGINLEFSV-VESNLEN 349
                  *********************99873333667*************77776*********....9*************************9.7****** PP

         GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                  l++e++++  gE+l+Vn++lqlh +++es    +   +vL++v +lsPk++v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ +  r+k+E
  PCP023344.1 350 LRPEDIKMYDGEVLVVNSILQLHCVVKESRGALN---SVLQMVHELSPKILVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKME 444
                  **************************88877777...8************************************************************ PP

         GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++++++ei+n+++ceg +r+erhe++ +Wr+r+++aGF++ p++  + +qak  l k+k  +gy++ ee+g+lvlgWk++p+v++S+W+
  PCP023344.1 445 QFYFAEEIKNIISCEGPARVERHERVDQWRRRMSRAGFQATPFK--MLAQAKQWLGKIKvCEGYTILEEKGCLVLGWKSKPIVAASCWK 531
                  ******************************************96..678***************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    
MAPSRNLLPE EYMINHERTN KMSVLDLSTH SAASAMTCYP YPHTPLLEEG GTASTPPYSD  60
ESGNHKRLKW TTSISDSMSS HNSLYSGGGS GDSCITDISL SRRSSTNSLN TLPRLHFRDH  120
IWTYTQRYLA AEAVEEAATV MSNAEGNGEE EDGTADGMRL VQLLIACAEA VACRDKSHAS  180
ALLYELRANA LVFGSSFQRV ASCFVQGLAN RLALVQPLGA VRFIGSAMST KDFALDKKEE  240
ALRLVYEICP HIQFGHFVAN SSILEAFEGE SFVHVVDLGM TLGLPHGDQW RGLIESLATR  300
TDQPPTRLRI TGVGLYGDRL QIIGEELEAY ADSLGINLEF SVVESNLENL RPEDIKMYDG  360
EVLVVNSILQ LHCVVKESRG ALNSVLQMVH ELSPKILVLV EQDSSHNGPF FLGRFMEALH  420
YYSAIFDSLD AMLPKYDTRR AKMEQFYFAE EIKNIISCEG PARVERHERV DQWRRRMSRA  480
GFQATPFKML AQAKQWLGKI KVCEGYTILE EKGCLVLGWK SKPIVAASCW KC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-81GRAS family protein