PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP022564.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 896aa    MW: 98069.2 Da    PI: 5.1914
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP022564.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.31.6e-24140241199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F   ++++ +
  PCP022564.1 140 FCKTLTASDTSTHGGFSVPRRAAEKLfppldftMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFI--RDEKSQ 233
                  99*********************999*****954444.4.48************************************************..457777 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++v+r+
  PCP022564.1 234 LLIGVRRA 241
                  8****997 PP
2Auxin_resp111.58.4e-37266349183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+++s+F+++YnPra++seFv++++ +++a+  +++s+GmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
  PCP022564.1 266 AAHAAANRSPFTIFYNPRACPSEFVIPLATFQRAVFgTQLSIGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 349
                  79********************************988*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 896 aa     Download sequence    
MMVSVEEKLK TGCLLDEMKL LKELQDHSGT RKAINSELWH ACAGPLVCLP QVGSLSYYFP  60
QGHSEQVAVS TKRTATSQIP NYPNLPSQLL CQVQNVTLHA DKETDEIYAQ MSLKPVSSER  120
DVFPVPDYGM KPSKHPSEFF CKTLTASDTS THGGFSVPRR AAEKLFPPLD FTMQPPTQEL  180
VVRDLHDNTW TFRHIYRGQP KRHLLTTGWS LFVGAKRLRA GDSVLFIRDE KSQLLIGVRR  240
ANRQQTTLPS SVLSADSMHI GVLAAAAHAA ANRSPFTIFY NPRACPSEFV IPLATFQRAV  300
FGTQLSIGMR FGMMFETEES GKRRYMGTIV GISDLDPLRW PGSKWRNLQV EWDEPGCCDK  360
QNRVSSWEIE TPESLFIFPS LTSSLKRPMH SGFLGAEAEW GNMTKRSFIR VPEIGNGNSF  420
PYQISNLCSE QLVNMLMKPQ LVNHAGTLAT LQQESAANVD SVDMKAMQAK INQKNPADGV  480
NANAPFHGIP PGNLNTVAKF GSQAPVGSST EKTKSEPELS ADQLSQLSSA GQGIEDKLVA  540
GFASPYNIMN QLTFANQNTS STQLQTSPRP TQPLDSLLYH SQQTDLPHSD FNGMNSSLPF  600
LDNDECMFYS SCQPFSGALR SPGALSAFCL PDSSTVLTDA NTSSLTSIGQ DMWDNSLINS  660
SSLRDLSDES NNQSGIYGCP NADVGSGLST VVDPCVSSTI LDDFSTLKNA NFQNSSDCLV  720
KNLSSSQDLQ SQITSASLGD SQAFSRQGLA DASGGTSSSN VELDESSLLQ NSSWHPVVAP  780
MRTYTKVQKT GSVGRSIDVT NFKNYEELCS AIECMFGLEG LLNDPRGSGW KLVYVDYEND  840
VLLVGDDPWE EFVGCVRCIR ILSPTEVQQM SEEGMKLLNS AAMQGMNSTM SEGGRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein