PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP022353.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 449aa MW: 51156.3 Da PI: 6.6972

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP022353.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.9	2e-21	122	218	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt++ v++Li+++ ++++ +++ +kk++W+ vs+ m ++g+++sp+qC++k+++lnkryk+++e+ +++ +++++++ ++ d + PCP022353.1 122 KWTDNVVRLLIDVVACVGDDGSDEGgeglkrksgilQKKGKWKTVSQIMISKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGtSCRVVENPALMDAM 218 7************888888875335666778888********************************************569999998888877 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MDSSGLGGGF MSGPSGGILD LESPVPRRQE MQLGHQLLGH HQHHMNVMGG GGIAGDRHPI 60 GLVEVKGSVP KVGSTIAKGK AVASFNGNNG YNLSDDDEQN YTDDESIEGA KGKKGSRWQR 120 MKWTDNVVRL LIDVVACVGD DGSDEGGEGL KRKSGILQKK GKWKTVSQIM ISKGCHVSPQ 180 QCEDKFNDLN KRYKRLNEIL GRGTSCRVVE NPALMDAMPH LSAKAKDDVR KILSSKHLFY 240 KEMCAYHNGQ RIPDCQELNP HGYSLPLGRC SKDINGSEEE EAEENHDSED DKLDNEDHND 300 ADNDRERMRR MSERKKAREE DGHMWPQHVP LDSFEVEVGD CFQDATKSLW ERRDWIKKQK 360 LQLEEQRVSF HAEALEIEKQ RYKWLRYCSK KDRELERLRL ENERMKLENE RRVLQLRQKE 420 VELDLRRSEA SLEPSSLGLG RDHIDLGRH

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MDSSGLGGGF MSGPSGGILD LESPVPRRQE MQLGHQLLGH HQHHMNVMGG GGIAGDRHPI  60
GLVEVKGSVP KVGSTIAKGK AVASFNGNNG YNLSDDDEQN YTDDESIEGA KGKKGSRWQR  120
MKWTDNVVRL LIDVVACVGD DGSDEGGEGL KRKSGILQKK GKWKTVSQIM ISKGCHVSPQ  180
QCEDKFNDLN KRYKRLNEIL GRGTSCRVVE NPALMDAMPH LSAKAKDDVR KILSSKHLFY  240
KEMCAYHNGQ RIPDCQELNP HGYSLPLGRC SKDINGSEEE EAEENHDSED DKLDNEDHND  300
ADNDRERMRR MSERKKAREE DGHMWPQHVP LDSFEVEVGD CFQDATKSLW ERRDWIKKQK  360
LQLEEQRVSF HAEALEIEKQ RYKWLRYCSK KDRELERLRL ENERMKLENE RRVLQLRQKE  420
VELDLRRSEA SLEPSSLGLG RDHIDLGRH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	305	316	RERMRRMSERKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	6e-61	Trihelix family protein