PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP021789.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 402aa MW: 46258.4 Da PI: 8.2105

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP021789.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	129	151	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg++F +++ L++H + H PCP021789.1 129 TCPVCGRRFYTNEKLMNHFKQiH 151 6*****************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MLTHLKFRHI LCTVQSSRPE TLISFTQLVR YCHFQLKTGF NSSNPSSCLA PKKISENSVA 60 IFWDLDTRPP KSVSPYKAAV KLKTAASSFG IVRHMIAYAN RNALNYVPQV VWERKERNRV 120 VIRDGESNTC PVCGRRFYTN EKLMNHFKQI HETEHVKRLN QIESARGSRR VKLVGKYSMK 180 MEKYKNAARD VLTTKVGRGL SDEVEQAGFW IRSVLDKPQG VKVALRHHIV DMMDHRRFDC 240 LMLVSDDSDF VDVVMEAKLR CLKTVVVGDF GDGALKRAAD SGFSWNEILI GKAKKEAVSV 300 VGKWKDRDVL KRLEWTYKSD EDQSLHKWND EVYGESERLE WTYKTDGDQS LHKWNDEVYG 360 ESEDDDIERF VGEANDNLGK DDTCSWWELD SDSEAISSQS SR

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MLTHLKFRHI LCTVQSSRPE TLISFTQLVR YCHFQLKTGF NSSNPSSCLA PKKISENSVA  60
IFWDLDTRPP KSVSPYKAAV KLKTAASSFG IVRHMIAYAN RNALNYVPQV VWERKERNRV  120
VIRDGESNTC PVCGRRFYTN EKLMNHFKQI HETEHVKRLN QIESARGSRR VKLVGKYSMK  180
MEKYKNAARD VLTTKVGRGL SDEVEQAGFW IRSVLDKPQG VKVALRHHIV DMMDHRRFDC  240
LMLVSDDSDF VDVVMEAKLR CLKTVVVGDF GDGALKRAAD SGFSWNEILI GKAKKEAVSV  300
VGKWKDRDVL KRLEWTYKSD EDQSLHKWND EVYGESERLE WTYKTDGDQS LHKWNDEVYG  360
ESEDDDIERF VGEANDNLGK DDTCSWWELD SDSEAISSQS SR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12240.1	1e-108	C2H2 family protein