PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP021377.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 375aa MW: 40273.5 Da PI: 6.5834

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP021377.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0017	88	107	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk+F ++ L H+r PCP021377.1 88 PCTECGKTFWSWKALFGHMR 107 5******************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MNNTPDLDFR FPISPPTHQD AVVPAAPATA YAASSSFTCF TANDRTHQNP RKKRSKLIRL 60 DNPTALNKVS RPKYAKKPDP SAPKITKPCT ECGKTFWSWK ALFGHMRCHP ERQWRGIEPP 120 PNLRRPALSN IPLSELGLAM GEEDHEAASS LLMLSSGITS GTSNENIIST AATQSVSNTS 180 NLQGALEVFD GCNSNNSGRF ECSSCKKVFG SHQALGGHRA SHKNVKGCFA ITRSDGEVDQ 240 DHHHHNGDGG DDDGDGDEDA MDEDHMDLGS SLGHKCSVCW RVFSSGQALG GHMRCHWDKG 300 DETQLGLGFE LGFGFNLQHP CETSKGLLLG QNSGGGGAGL DLNLSAAAAS VSHTTEDDHQ 360 HYSSSGLTLD LRLGL

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MNNTPDLDFR FPISPPTHQD AVVPAAPATA YAASSSFTCF TANDRTHQNP RKKRSKLIRL  60
DNPTALNKVS RPKYAKKPDP SAPKITKPCT ECGKTFWSWK ALFGHMRCHP ERQWRGIEPP  120
PNLRRPALSN IPLSELGLAM GEEDHEAASS LLMLSSGITS GTSNENIIST AATQSVSNTS  180
NLQGALEVFD GCNSNNSGRF ECSSCKKVFG SHQALGGHRA SHKNVKGCFA ITRSDGEVDQ  240
DHHHHNGDGG DDDGDGDEDA MDEDHMDLGS SLGHKCSVCW RVFSSGQALG GHMRCHWDKG  300
DETQLGLGFE LGFGFNLQHP CETSKGLLLG QNSGGGGAGL DLNLSAAAAS VSHTTEDDHQ  360
HYSSSGLTLD LRLGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	4e-74	C2H2 family protein