PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP020978.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 777aa MW: 81598.1 Da PI: 7.8746

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP020978.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.5e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PCP020978.1 61 FVCEICSKGFQRDQNLQLHRRGH 83 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 777 aa Download sequence
MPTDLDNSPT ASGEASVSSS GNQTAPPKPA TKKKRNLPGM PDPDAEVIAL SPKTLLATNR 60 FVCEICSKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPEASCV HHDPSRALGD 120 LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT LFSRRDSFIT 180 HRAFCDALAE ESARAPTTTS ATAAAAAAAA AAAAAAVNLN SESDPRAQSV ISPPQPLPSP 240 PLPAAAPPQP TTSSVPSQSA GVLSSSPPTQ SPVRELPENP TQFVEAVPAV AGRKGNCSSS 300 SSSNSSSSNG STSSGVFASL FASSTTSASL QPPQQPAFTD LIRAMGHPDQ STNLAPSSSM 360 EPISLGLSTS HGSSIFESAG QERRQYAPPP QPAMSATALL QKAAQMGAAA TNASLLRGFG 420 IMSSSTSSTQ QESMQWNQRP AEPDNVSVAA GLGLGLPCDG GSGWKELMMG SPPMFGPKQT 480 TLDLLGLGMA AGNNPSSGLS ALITSIGGGL DVAAAAASYG GGEYSGCIAK PGDERLSGWM 540 LPIWVYSTRP GLRAIRLGPK LNSLRSIELL IADVLQEEDK VSSERDIQTS SSLCNATGAA 600 HNLTFDGNSN DEQPANSTIL SDQFRPKALM LLSGSCYLPH PDKEATGGED GHFICEDAQA 660 IGVADGVGGW ADVGVNAGFF SCELMSHSVR AIQEEPEGCF NPVRVLEKAH SCTKSKGSST 720 ACIIGLTEKV TAQKIAVLAC QQALDKNRQS PFLRLLKMLV SVIMEASLMA LPLLCHI

Sequence ? help Back to Top

Protein Sequence Length: 777 aa Download sequence

MPTDLDNSPT ASGEASVSSS GNQTAPPKPA TKKKRNLPGM PDPDAEVIAL SPKTLLATNR  60
FVCEICSKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPEASCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ESARAPTTTS ATAAAAAAAA AAAAAAVNLN SESDPRAQSV ISPPQPLPSP  240
PLPAAAPPQP TTSSVPSQSA GVLSSSPPTQ SPVRELPENP TQFVEAVPAV AGRKGNCSSS  300
SSSNSSSSNG STSSGVFASL FASSTTSASL QPPQQPAFTD LIRAMGHPDQ STNLAPSSSM  360
EPISLGLSTS HGSSIFESAG QERRQYAPPP QPAMSATALL QKAAQMGAAA TNASLLRGFG  420
IMSSSTSSTQ QESMQWNQRP AEPDNVSVAA GLGLGLPCDG GSGWKELMMG SPPMFGPKQT  480
TLDLLGLGMA AGNNPSSGLS ALITSIGGGL DVAAAAASYG GGEYSGCIAK PGDERLSGWM  540
LPIWVYSTRP GLRAIRLGPK LNSLRSIELL IADVLQEEDK VSSERDIQTS SSLCNATGAA  600
HNLTFDGNSN DEQPANSTIL SDQFRPKALM LLSGSCYLPH PDKEATGGED GHFICEDAQA  660
IGVADGVGGW ADVGVNAGFF SCELMSHSVR AIQEEPEGCF NPVRVLEKAH SCTKSKGSST  720
ACIIGLTEKV TAQKIAVLAC QQALDKNRQS PFLRLLKMLV SVIMEASLMA LPLLCHI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-108	C2H2 family protein