PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP020443.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 601aa    MW: 68119.1 Da    PI: 5.7362
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP020443.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS42.31.2e-132623732114
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   + Ll++Ae v  +++e+a++lL + +  as + +p+qR+++yfteAL++r+ + +++++yk  + s+ s  n  ++   + +f++ +P+        
  PCP020443.1 262 AHILLAAAEKVGYQQFERANRLLLHCEFAASFKVNPVQRVVFYFTEALRKRIEKeTGNSMYKGNEISTYS--NGLSTNLTFLAFYQDTPFSFSNAAPR 357
                  699***************************************************8889999998888887..34444445568******987777778 PP

         GRAS  99 NqaIleavegeervHi 114
                  N  ++e ++g e+ Hi
  PCP020443.1 358 NPRLMEVLAGREECHI 373
                  99*********99998 PP
2GRAS182.23.6e-56359599126374
         GRAS 126 paLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles 222
                  p L++ La R+      l iT+vg    + k+++eetg+rLa++A++l++pf+f+++++ ++ed++ + ++v+  Ea++V   l l ++ +++ +le+
  PCP020443.1 359 PRLMEVLAGREeCHIELLTITAVGV---TGKQKIEETGRRLASVAKALNLPFQFKAVIVADMEDVKDQLFDVEDYEAVVVYAPLILRTMISRPSCLEN 453
                  78********94445699*******...68************************************************************88888888 PP

         GRAS 223 erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320
                      +++++++lsP+v+vv+e ea+hns+sF++rf++al yysa+fd+lea + +++++r+ +E   l++ i+n+v +eg+er+ r  t+e Wr+ + 
  PCP020443.1 454 ----LMRVMRNLSPRVMVVIEVEANHNSPSFVNRFIDALFYYSAFFDCLEACM-KQEKDRVLMEGL-LHEGIRNIVVAEGSERVVRSVTMEVWRAFFA 545
                  ....***********************************************96.666777777765.******************************* PP

         GRAS 321 eaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++ + +++ls+ a  qa+l+ ++++s   +++ + ++l+ gWk+ p+ s+SaW+
  PCP020443.1 546 RFRMVEINLSNAALYQASLVAKMFGSPPCTLDWNGKCLIVGWKGTPIHSLSAWK 599
                  *************************999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    
MANAFFSFTP FDFGVLGGGG GLTPQLEDYE KEDQELKGKP DHLFGIEELG LGEMEKLSHL  60
SKDQQQSKAS DLMLDNFSFH TGCSEHDLQR SSFKSEKARA HVSKDHDHRH YQQQNQHYQQ  120
PSKSNYSDWD NFTFDSAFPS TQPIQDATNE LTYSQIGESD IAETNKQMPH QPSLAVLELL  180
NNYGSAFKNL RGDRLSNRCN EAEASLFSIQ QKLSTEEIMR VAGARYVQFS NQGYGDFFMP  240
LHPFGYALSG LSEEETKDVE LAHILLAAAE KVGYQQFERA NRLLLHCEFA ASFKVNPVQR  300
VVFYFTEALR KRIEKETGNS MYKGNEISTY SNGLSTNLTF LAFYQDTPFS FSNAAPRNPR  360
LMEVLAGREE CHIELLTITA VGVTGKQKIE ETGRRLASVA KALNLPFQFK AVIVADMEDV  420
KDQLFDVEDY EAVVVYAPLI LRTMISRPSC LENLMRVMRN LSPRVMVVIE VEANHNSPSF  480
VNRFIDALFY YSAFFDCLEA CMKQEKDRVL MEGLLHEGIR NIVVAEGSER VVRSVTMEVW  540
RAFFARFRMV EINLSNAALY QASLVAKMFG SPPCTLDWNG KCLIVGWKGT PIHSLSAWKF  600
T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-45GRAS family protein