PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP019836.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 1439aa MW: 160832 Da PI: 8.7232

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP019836.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00089	1323	1348	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C C++sF +k++L H r+ + PCP019836.1 1323 FVCDleGCTMSFASKHELSLHKRNiC 1348 899999****************9877 PP
2	zf-C2H2	12.9	0.00034	1348	1370	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L++H r+H PCP019836.1 1348 CPvkGCGKKFFSHKYLVQHRRVH 1370 9999*****************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 1439 aa Download sequence
MAASSGLVAE ANPEVFPWLK TLPVAPEYHP TWVEFQDPIA YIFKIEKEAS QYGICKIVPP 60 VPPSSKKTTI GNLNRSLAAR AGVLGSSGPK SQPTFTTRQQ QIGFCPRRPR PVHRPVWQSG 120 EHYTFQEFEA KAKSFEKSYL RKCSKKGGLS PLEIETLYWK ATVDKPFSVE YANDMPGSAF 180 VPVSARKSSS TSKDAGDNVT LGDTAWNMRG VSSWFAWHVE DHDLHSLNYL HMGAGKTWYG 240 VPRDAAVAFE EVVRVQGYAG EINPLVTFST LGEKTTVMAP EVFVSSGVPC CRLVQNAGDF 300 VVTFPRAYHT GFSHGFNFAE AANIATPEWL RVAKDAAIRR ASINYPPMVS HFQLLYDLAL 360 ALCSRMPARI SSEPRSSRLK DKRKGEGDIV VKELFVQDVI QNNDLLHVLG KGSPIVLLPQ 420 SSSDLSVCSK LRVGSQSRVN PGFSPGSYDL KEEMKSSGSV SDGLMIEGQQ VKGFYSVRGK 480 LVSLSESNSL HSLSGCNNVC GLHLKRSNLS CERESHVEGE GLSDQRLFSC VTCGILSFAC 540 VAIIQPTEEA ARYLMSADCS FFNDWVVGSG LGSKAFSGVT GDPVTSNNAP CTGLEENNAP 600 NGLYDVTVHT GNYQIQVVDQ RNEVVSNTEM PRETSALGLL ALNYGNSSDL EEYQVEIDAP 660 VCSDEPKVTN CSLESRYRDQ SASLPYGGTS GVHSPSSAGS ECEKELRLQN FDHYATDGRK 720 IANFKDTSHQ DIDSSADFRT NNYASTATGF GKAIVPIQKT NTSCHPGCDE DSSRMHVFCL 780 EHAVEVQQQL RSIGGVHILL LCHPDYPRIE EEAKSMAEEL GISYLWNDMA FMNATKEDET 840 RIQLALDSED AIAGNGDWAV KLGINLFYSA SLSRSHLYSK QMPYNSVIYK AFGRSSPASS 900 PTRIDVYGRR GGKPKKVVAG KWCGKVWMSN QVHSFLVKRD PEEEVEVAED EEERSFRAWA 960 MPEEDDEVKS EITRRTEKTV KKYARKRKMA ADTRTAKKAK CFEKEDAVSD YSLDDNSHQQ 1020 QRRLPKSKQA KYIERGRTKK AKCIETHDAF SDDSMQEDDS HQQNGRILHS EQVEYIGRSD 1080 VSDDSVGIDS HQQHRRTAKS KQFKPVETDV VSDDSFEGSS HQPRRVLRSK TTKCTGRENL 1140 ISEDVRGFSS HQQRRSISRS KQARARFMER EDTSLDETPE DNSQQHKRNL RNKQTKPETR 1200 GKMRQETSRQ VKQGTAPLAK QGTRTLRNQQ TPQQTKKQTP RLRNNQSEQN NQSEQNSFDL 1260 YAEDETEGGP STRLRKRAPK PSKVPGTKSK EQQQTARKKA KNASAGKTQA GRNETKREED 1320 GEFVCDLEGC TMSFASKHEL SLHKRNICPV KGCGKKFFSH KYLVQHRRVH TDDRPLRCPW 1380 KGCKMTFKWA WSRTEHIRVH TGARPYVCAE PGCAQTFRFV SDFSRHKRKT GHSAKKSKK

Sequence ? help Back to Top

Protein Sequence Length: 1439 aa Download sequence

MAASSGLVAE ANPEVFPWLK TLPVAPEYHP TWVEFQDPIA YIFKIEKEAS QYGICKIVPP  60
VPPSSKKTTI GNLNRSLAAR AGVLGSSGPK SQPTFTTRQQ QIGFCPRRPR PVHRPVWQSG  120
EHYTFQEFEA KAKSFEKSYL RKCSKKGGLS PLEIETLYWK ATVDKPFSVE YANDMPGSAF  180
VPVSARKSSS TSKDAGDNVT LGDTAWNMRG VSSWFAWHVE DHDLHSLNYL HMGAGKTWYG  240
VPRDAAVAFE EVVRVQGYAG EINPLVTFST LGEKTTVMAP EVFVSSGVPC CRLVQNAGDF  300
VVTFPRAYHT GFSHGFNFAE AANIATPEWL RVAKDAAIRR ASINYPPMVS HFQLLYDLAL  360
ALCSRMPARI SSEPRSSRLK DKRKGEGDIV VKELFVQDVI QNNDLLHVLG KGSPIVLLPQ  420
SSSDLSVCSK LRVGSQSRVN PGFSPGSYDL KEEMKSSGSV SDGLMIEGQQ VKGFYSVRGK  480
LVSLSESNSL HSLSGCNNVC GLHLKRSNLS CERESHVEGE GLSDQRLFSC VTCGILSFAC  540
VAIIQPTEEA ARYLMSADCS FFNDWVVGSG LGSKAFSGVT GDPVTSNNAP CTGLEENNAP  600
NGLYDVTVHT GNYQIQVVDQ RNEVVSNTEM PRETSALGLL ALNYGNSSDL EEYQVEIDAP  660
VCSDEPKVTN CSLESRYRDQ SASLPYGGTS GVHSPSSAGS ECEKELRLQN FDHYATDGRK  720
IANFKDTSHQ DIDSSADFRT NNYASTATGF GKAIVPIQKT NTSCHPGCDE DSSRMHVFCL  780
EHAVEVQQQL RSIGGVHILL LCHPDYPRIE EEAKSMAEEL GISYLWNDMA FMNATKEDET  840
RIQLALDSED AIAGNGDWAV KLGINLFYSA SLSRSHLYSK QMPYNSVIYK AFGRSSPASS  900
PTRIDVYGRR GGKPKKVVAG KWCGKVWMSN QVHSFLVKRD PEEEVEVAED EEERSFRAWA  960
MPEEDDEVKS EITRRTEKTV KKYARKRKMA ADTRTAKKAK CFEKEDAVSD YSLDDNSHQQ  1020
QRRLPKSKQA KYIERGRTKK AKCIETHDAF SDDSMQEDDS HQQNGRILHS EQVEYIGRSD  1080
VSDDSVGIDS HQQHRRTAKS KQFKPVETDV VSDDSFEGSS HQPRRVLRSK TTKCTGRENL  1140
ISEDVRGFSS HQQRRSISRS KQARARFMER EDTSLDETPE DNSQQHKRNL RNKQTKPETR  1200
GKMRQETSRQ VKQGTAPLAK QGTRTLRNQQ TPQQTKKQTP RLRNNQSEQN NQSEQNSFDL  1260
YAEDETEGGP STRLRKRAPK PSKVPGTKSK EQQQTARKKA KNASAGKTQA GRNETKREED  1320
GEFVCDLEGC TMSFASKHEL SLHKRNICPV KGCGKKFFSH KYLVQHRRVH TDDRPLRCPW  1380
KGCKMTFKWA WSRTEHIRVH TGARPYVCAE PGCAQTFRFV SDFSRHKRKT GHSAKKSKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein