PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP019720.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 434aa    MW: 47181.5 Da    PI: 7.4176
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP019720.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33e-09112132526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C+f+ + G C+yGd+CkF H+
  PCP019720.1 112 VCNFWVQ-GNCSYGDKCKFLHS 132
                  7******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    
MDVDGGGSKR VFYRLGGPQS DPSKNQKVCY HWRAGKCNRH PCPFLHRELP APPSQQGLNG  60
MASTKRHHAF AADTDGPSSR NRGPNNFNGG TSSTWGRTGG ANRVFVRKME KVCNFWVQGN  120
CSYGDKCKFL HSWSMGDSFS LLTQLEGHEK VVSGIALPSG SDKLYTGSKD QTVRVWDCAS  180
GQCLGVINLG GEVGCMISEG PWIFVGIPEA VKAWNTQTNS ELSLSGPVGQ VYAMVVGNDL  240
LFAGTQDGSI LAWKFNAVTN CFEPAASLIG HTLAVVSLVV GANRLYSGSM DPSIRVWSLE  300
TLQCIQTLTE HTEVVMSVLC WDQFLLSCSL DRQLKVWVAT QSGNLEATYT HTEEHGLITL  360
CGMHDSEAKP VLLCACNDNT VRIYDLPSFS ERGKIFSKQE IRSIQVGPGG LFFTGDGTGQ  420
VKVWKWTEPA AVTA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0C3H family protein